Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2218 ATGATCAATAGTACAAAGGAAGCAGATTTTCCACTAAAACAGGAAGGTCTTTCTTCAAGTGATCATGAAAAGGCAAAAGCTTCATTGAGCTCATCATCACAATGGCTAAAATTGAAGGATCCAAGGATTGTTCGGGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTGTGCACAATAAGAGGACTAAGAGATAGGAGGGTGAGGCTTTCAGTCCCGACAGCAATTCACCTCTATGACCTCCAAGATAGGCTTGGACTCAATCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTGCCACCACTTCCTATACCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATGAACATAGCACCTCTCGTGAAGGTTCAGGCCAAAATACTATATGGAAATCAAAGTCCAAAGAAGTTTTAGGAGAAATGGTTAGTGATAAAGCAAATTGGATGAATAgaaatgaagatgatgatgatgatgatgataataataatactaatgatAAACAAGGAAGCAATAATTGTCATGGTGCACATGTTTTGCCAAATAATCTCTTACCAAGAGCAAATCATCCTTCTTTTTTGGGCTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAGCCTAATTCAGCTGATGCTGCTCAATGGGCAAACCATGGATTTGTTAACCAAACAGATATACACAGTATCAATGTAGTTCCATTCCCATCAACATTGGCTTTATCAACTGGGAGTGCTCCTTCTCAAATTTTGGTGTGTCCTCCTGAAGCAACACAGCCATATTTCCCTTCCCATGTTGCAGCAATGGAGATGAATCCAAGACAAATCAATCACTACCAGATGCTGAGTTCAAGTTCTCAAAATCTCTTGGCAAATTCCCTCAACCCCTCACAACAACTAATGAGCCAATCAAGGAAAGTACCATTCAGCTTGGGGAGGCCTAAACTTTTCCATTCTCCTAACGGCAGTGAAAGCCATTCTCGTAAAGACCAGGATTTTCCTTCCAAGTGA 1059 0.4004 MINSTKEADFPLKQEGLSSSDHEKAKASLSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVACNEHSTSREGSGQNTIWKSKSKEVLGEMVSDKANWMNRNEDDDDDDDNNNTNDKQGSNNCHGAHVLPNNLLPRANHPSFLGLMNTMPSLGYQWEPNSADAAQWANHGFVNQTDIHSINVVPFPSTLALSTGSAPSQILVCPPEATQPYFPSHVAAMEMNPRQINHYQMLSSSSQNLLANSLNPSQQLMSQSRKVPFSLGRPKLFHSPNGSESHSRKDQDFPSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2218 352 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g2218 352 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 348 IPR005333 GO:0003700
Ssu8g2218 352 MobiDBLite consensus disorder prediction 338 352 - -
Ssu8g2218 352 MobiDBLite consensus disorder prediction 327 352 - -
Ssu8g2218 352 MobiDBLite consensus disorder prediction 164 194 - -
Ssu8g2218 352 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Ssu8g2218 352 Pfam TCP family transcription factor 52 182 IPR017887 -
Ssu8g2218 352 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2218 Ssu-Chr8 58362364 58363422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2218 35 297 TCP Transcription Factor Family AT3G02150 44.086 3.53e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu8g2218 TCP 7.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2218 - - aprc:113867214 561.607