Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2217 atgtctaaaaagGTTATGACCACAATGAAGGATGAAAATCCAGATTTGCAGAAGCAAATTGGGTGCATCAGTGGATTTTTTCAGCTGTTTGACCGCCACAGGTTCCTCACAGGCCAACGCAGCAGCAGCCACAATCAGAACATACCAACTAGAGGTGGAACCAGTAAGCATATCAAAGAGGTGAATAATTCAACTCAAAGGGCAACGGCAAATAATGTGAAGGTTGCAAGAGAGAATCATCAATTCTCCACAGAATCATCAGGAACTTCAATGTCTTCATCATCTCGTTCATCCAGCATGTCATCCCTTGAGTTTAATAGAACAATTCAGATAGAACCACCATCAGTCAGTCAAATCAAAATTCCAGAAAACTCTAATTCAGGAGCAGCAATGAAGCAACTTTGCAACCAAGGCCATCATCAATCCCTTGATTTCTATGATATTGTCAAGGACTCAATGCACAGAGATGTTCATGGATTGTCAGTAAAAACTGCAGctaaagaggaaaagaagggtCGCATCTTGAAATACATTGACTCTCCCAGGCCTTTGGAGCCTCCCAAATCAGTCAATACAGGAGTTATGGCTGCTTGGGATTCACCAAGACTCTCTTATGATGGGAGGGATACACAAGATACATTCAAAGCTGCCAAAAAAGCCAAGGAATTGCCAAGGCTTTCCTTGGACAGCAGAGAAGGATCCAtcaaaagtttcaatgaaggaACAAAATCTCGCAGCCTTTTGAAGGGTCCACAGAGAGGGTATGGGAGCTCCAGCACAATGCTCAAGCAGCTGCAGGAACCAGAAACTTCTAGAAGACCATCCAGTGTTGTAGCAAGGTTAATGGGACTAGAATCCTTCCCAGACTGCACACAAACTTGTGATACTATGCCGAGGATCGAGACCATTGCAGGATCTAGCAGGAATGATGAGTACAAGCAACACCAAAGTGCAGCATCCCCAAGAACAAGTAAAGGGTCTAGCTTGCTTGAGTTTAGGAGGGATGCTTCAATCCTGAATGTGACGCCCTATTCACGGTTTTCCCTAGAACCAACTCCATGGAGGCAACATGAAGCAAGCCAAGGTTCTCAATTACAGGCTTCCAAGAGAAGTGAATCTTCAACAAAAGCATCACATCTATCCCTCTCTGTATATGGGGAAATTGAAAAGAGGATAGCAGATATAGAGTTCAAAAATTCTGGAAAGGATCTCAGAGCCCTTAAACAGATTCTTGATGCAATACATAGATATAAAGAATCATTAGATGTTACAAGAGATCAGGCTTCAAATTCTCCATCTGACAATAGGAGCAACAGCAGTCTCAGTGAAAGCTCCATAGTACAAAGCCCAAGAATGCGACAGAAGGAACCAACATCCACCAGTGTTGAGATGTCAAATTCAACTCAGGGTAGTAAATCACCAATTTTCATCATGAAACCAGCAAAAGCTGCAAGAAAAACCAACAATCCTGCTTCCACAGAAATGTCATTTCATGGTAAATCAAGCCCCAACAGGTTTATCACTGGTAACCCCGCGAATGGAATATTGGTTGACAAGCTTGACAGGCAAACAACAAAAGGTATCAGTCCAGCAATCAGACATGCCAAGGACCCCATCAGTCAACCCTTTCATTCAGTGGATAAGAACAATAAGATGAGAACTTCAAAATTGATGCAATCCTCAAAAGTTCCTCAAGTCATCAGTGGAGAAAATGCTACCAACTTCAGCAACACAGCAGAGGCCAGGAGCCCAAGATTACAAAAGAAGTTTGGTTTGGAGAGGCGTTCTCCGCCAACTAGCCCATCATCAGATTCCAGCAGTAACAGAAGACAACATAATAGGCAATCAGTGGAATTGTCTTCCCCAAGTACAACACCCAGACAAAAATTCTCTACTTTGCAGAAAAGAAATGAGCATTTCAGTGATATCAGCAATCAAAGGAAGGATTTTAAGCATGAAGTTGATGTTATTTCACCAGATTTTGACAGTAAGAGAAGCATGGACTCTTACAGTGACATAGAAGTCATTCACATTGATCATTCTGATAAGATCAATGGCAACTCCATCCAGCTAAAAAGCCTGAATAAAAATAATGCGGCAAAAGAGTTGAGCAAGGAAAGCTTTTTGGCTGAGAAAATAATAACGGCAGAACAACCAAGCCCTGTGTCTGTTCTTGATGCTGCTTTCTACAGAGAAGAACCACCTTCTCCAGTTAAAAAGAAATCAGACATCTCAAAAGACTTAGATGAAGCTCTGAACACTTATGATAGTAGTGAGGAGAATTCAGAAGATCTTCCTCTTTCATCCAGCATTGCAAAAGCCAACTTCAGTAGTGGAATCAGTGATACTGACTTGAAAACTCAAAATTTGGTCCAAATTCTTCAACAAATTGACTGCAATGACGAGAGATTCACCAATTTCAGAGAAGATAAAGATCCTgaccatatatatgtatcagaaATACTGATAGCATCAGGGCTGCTCAGTAGTCAAAGCTCTAGCCAGGTTTTTCATTCATCAAGTTACCCGATAAACCCAAAGTTGTTCCTTGCACTAGAGCAAATCAAGACAAACAAGATGTGTTTCAATATTGAACACAATGCCAAGAAGATTGCTGGGCTGAATAGTCCCGAGCAAATGCAAAGAAGGCTCATATTTGATGTCGTTAATGACATTCTAGCACAGAAACTAATATTGGAAAGTTCTACTATCTGGTGCCAACCAAATCAGCCAGCAGGTAGAAAGCCAAGAGGACATCTGCTTCTGGATGAGCTTTGCacagaaattgataagttacaACACAGAAATAGGAATGTCAACCTGGATAATGAGGATGAGAATTTGACAAGTCCCCTGTGGGAAGAGTTTATGCACTGTCCCGCAGTTTACACAAATGGTTACAGTGCAATACCAAATGTCGTGTTGGATATTGAACGGTTGATCTTCAAAGATTTGATAACTGAAGTCGTGAGAAGTGAACTAGCTAAACATTCTGGTAAGCATTGCAGACAACTGCTGTTTCCCAAGTAG 3030 0.4046 MSKKVMTTMKDENPDLQKQIGCISGFFQLFDRHRFLTGQRSSSHNQNIPTRGGTSKHIKEVNNSTQRATANNVKVARENHQFSTESSGTSMSSSSRSSSMSSLEFNRTIQIEPPSVSQIKIPENSNSGAAMKQLCNQGHHQSLDFYDIVKDSMHRDVHGLSVKTAAKEEKKGRILKYIDSPRPLEPPKSVNTGVMAAWDSPRLSYDGRDTQDTFKAAKKAKELPRLSLDSREGSIKSFNEGTKSRSLLKGPQRGYGSSSTMLKQLQEPETSRRPSSVVARLMGLESFPDCTQTCDTMPRIETIAGSSRNDEYKQHQSAASPRTSKGSSLLEFRRDASILNVTPYSRFSLEPTPWRQHEASQGSQLQASKRSESSTKASHLSLSVYGEIEKRIADIEFKNSGKDLRALKQILDAIHRYKESLDVTRDQASNSPSDNRSNSSLSESSIVQSPRMRQKEPTSTSVEMSNSTQGSKSPIFIMKPAKAARKTNNPASTEMSFHGKSSPNRFITGNPANGILVDKLDRQTTKGISPAIRHAKDPISQPFHSVDKNNKMRTSKLMQSSKVPQVISGENATNFSNTAEARSPRLQKKFGLERRSPPTSPSSDSSSNRRQHNRQSVELSSPSTTPRQKFSTLQKRNEHFSDISNQRKDFKHEVDVISPDFDSKRSMDSYSDIEVIHIDHSDKINGNSIQLKSLNKNNAAKELSKESFLAEKIITAEQPSPVSVLDAAFYREEPPSPVKKKSDISKDLDEALNTYDSSEENSEDLPLSSSIAKANFSSGISDTDLKTQNLVQILQQIDCNDERFTNFREDKDPDHIYVSEILIASGLLSSQSSSQVFHSSSYPINPKLFLALEQIKTNKMCFNIEHNAKKIAGLNSPEQMQRRLIFDVVNDILAQKLILESSTIWCQPNQPAGRKPRGHLLLDELCTEIDKLQHRNRNVNLDNEDENLTSPLWEEFMHCPAVYTNGYSAIPNVVLDIERLIFKDLITEVVRSELAKHSGKHCRQLLFPK 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2217 1009 Coils Coil 741 761 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 234 273 - -
Ssu8g2217 1009 Pfam Domain of unknown function (DUF4378) 814 988 IPR025486 -
Ssu8g2217 1009 Coils Coil 922 942 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 632 646 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 556 646 - -
Ssu8g2217 1009 Pfam DUF761-associated sequence motif 276 289 IPR032795 -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 352 379 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 424 474 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 303 327 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 77 104 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 596 631 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 422 509 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 234 276 - -
Ssu8g2217 1009 PANTHER LONGIFOLIA PROTEIN 1 1008 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 556 583 - -
Ssu8g2217 1009 MobiDBLite consensus disorder prediction 486 509 - -
Ssu8g2217 1009 PANTHER LONGIFOLIA PROTEIN 1 1008 IPR033334 GO:0051513
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2217 Ssu-Chr8 58332057 58336882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2217 140 1004 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 31.351 1.49e-84 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2217 - - gmx:100793602 1529.23