Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2207 ATGAGGTTCAACTGTGTCACCTCTTTAGCACTCACCCTTCTCTTCCTCTCCATACAACTCCAAGCATACAACCCAGGGGACCGTTTCACCATCAGTTGCGGCACCACCGGAAAATCGTCCGACGGCGAAAGGATATGGACGGGGGATACAGACTCAAACCTCTTATCTCTTCAAGACGGCGCCGTTTCCGCTAATGCAACAACACAATCTCCTTCCACCAATCAAGTCCTCTACACCACAGCTCGCTTGTCCCGTTCCCAATTCAACTACTCATTTCCCGTCACCGCAGGGCCCAAATTTGTTCGCCTTTTCTTTTACCCAGCTTCCTACCCTTCCTTTCCCCGTTCCGAAACATCCTTCACCGTTCATTCCAACCAATTCACCCTCCTCAATGGTTTCAATGCCTCTCTCAACGCCGACGTGGAAAAGACAAAAACCATCTTCAGAGAATACGTGATCAACGTGGACGACGGTGAGAGGCTGAACCTCAGCTTCACTCCGTCGCAATCAAAGTCCTACGCTTTCATCAACGGAATCGAGGTACTTTCCATGCCAAGCGATCTGTACTACACGTCAGCAAATGACGTGGGCTTCAAGCTCGTGGGAAGCGACACGCTGTACAGCGTTAGAACCAACTTTGCGCTGGAGACAGTGTATAGAATCAAAGTCGGAGGGCAAGGAATATCGCCACGAAACGACACCGGTTTGTTCAGGAACTGGGCCGGTCACGATgaagattatttaattaaacaaaaaaatccaCAGAATAATGATCTACTAGGTGACTTGGACGGTAAGATGAACATAACCGTGAATCCTGATTACGTGGCACCCAAGGAACTGTACCGAACAGCTCGTGACATGGGCACAAACACCACTCTGAAGAAAAGTCTCAAGTTGACTTGGGAGTTCCCCGTTGACTCTGGCTTCTACTACATGGTCAGGCTCCACTTTTGCGAACTTTACCCGAATACTAATAACATCGGTGAGAGGGTGTTCTTCGTTTCCATAGGGAGGGAGTTGGCTGAGGACCAGGCTGATGTTATGAGATGGAGCGAGAAACAGAAAGGTCTCGCTGTGTATAAAGACTATGCCGTTTCAATCCCCAAGAATGATACTCAGAAAAAGGTTAATCTCTCTCTCCAAATGCAGCCTTACGAGAATACGAGCGACCCGTTCTTGAACGGTGTCGAGATCTTCAAAATCAGCGAGGCCGGGTCTAACAACCTCGCCGGACCCAACCCGCAGAACAACATGCCCGTCCGAAAGGGAAAGAACAGCAGCAGAACACTGAAAATTGTGGTGGCAGGGGTGGTATCCGGCGTCGTTTTGATCTCGCTTGTCGTTTTCTTCGTCTTCAGGTGGTGGGCGAGTTCCAAGCGCGGTCCACTCTCGTTCCCAATTACCGAATCAACCAACACGCAGAAGCCATGGTACCTGGGTTCCTGGCAGCCTTCCTATCTCTACCGCCGCTTCTCCCTCGCAGAGATCAAAGCCGCCACCAACAACTTCGACGACGCCTTCATCGTCGGCGTCGGGGGATTCGGCAACGTGTACAGGGGCTATGTCAAGGGCATTGGGGATTTACGCCACGTGTACAATCGCTACATCGACCCCCGTTACATCCCGGTGGCTATTAAGCGCCTCAAACCGGGTTCGAAGCAAGGGGCTGACGAGTTCCTGAATGAGATCGAGATGCTCTCGCAGCTCCGCCACCGCCATCTTGTTTCTCTCATCGGCTACTGCAACAACAACAAGGAGATGATCCTGGTCTACGATTTCATGACACGTGGCAACCTCCGGGACCATCTCTACAACACGGATAACCCCCCTCTCTCGTGGAAGCGACGCTTGCAGATTTGCATTGGCGCTGCGCACGGGCTTCATTATCTTCACAGATGCGCCGCGAAGCACACGATCATCCACAGCGACGTGAAAACGACCAACATCTTGTTGGACGAGGACTGGGTGGCCAAGGTTTCGGACTTTGGGCTATCCAGAATTGGGCCAATGGACACGTCCCAGGCCCATGTTAGCACCACCGCTGTGAGAGGCAGTTTTGGGTATTTAGATCCGGAGTATTATAAACGGCAGCATTTGACGGAGAAGTCTGACGTGTACTCTTTCGGAGTAGTGCTATTTGAGATACTGTGCGCTCGTCCGCCTTTGATCCACACCGCGGCGCCAAAACAGGAGGTGCTTGCTAATTGGGTCAGATACTGTTACCAAAGTGGGATCATGCAGCAGATTGTGGACCCCGCGTTAAAGGGGAAGATCGCGCCCGAGTGTTTCAGGAAGTTTTGTGAGATTGGGGTGAGTTGTTTGTTACGTGATGGGACGCAGAGGCCGTCGATGAAGGACGTCGTTGAGATGTTGGAGTTTGCTCTGCAGCTGCAAGAAAGTGCGGATAAGCGCAAAAATGCTGGTACTGTTGCCGAGTGA 2442 0.5119 MRFNCVTSLALTLLFLSIQLQAYNPGDRFTISCGTTGKSSDGERIWTGDTDSNLLSLQDGAVSANATTQSPSTNQVLYTTARLSRSQFNYSFPVTAGPKFVRLFFYPASYPSFPRSETSFTVHSNQFTLLNGFNASLNADVEKTKTIFREYVINVDDGERLNLSFTPSQSKSYAFINGIEVLSMPSDLYYTSANDVGFKLVGSDTLYSVRTNFALETVYRIKVGGQGISPRNDTGLFRNWAGHDEDYLIKQKNPQNNDLLGDLDGKMNITVNPDYVAPKELYRTARDMGTNTTLKKSLKLTWEFPVDSGFYYMVRLHFCELYPNTNNIGERVFFVSIGRELAEDQADVMRWSEKQKGLAVYKDYAVSIPKNDTQKKVNLSLQMQPYENTSDPFLNGVEIFKISEAGSNNLAGPNPQNNMPVRKGKNSSRTLKIVVAGVVSGVVLISLVVFFVFRWWASSKRGPLSFPITESTNTQKPWYLGSWQPSYLYRRFSLAEIKAATNNFDDAFIVGVGGFGNVYRGYVKGIGDLRHVYNRYIDPRYIPVAIKRLKPGSKQGADEFLNEIEMLSQLRHRHLVSLIGYCNNNKEMILVYDFMTRGNLRDHLYNTDNPPLSWKRRLQICIGAAHGLHYLHRCAAKHTIIHSDVKTTNILLDEDWVAKVSDFGLSRIGPMDTSQAHVSTTAVRGSFGYLDPEYYKRQHLTEKSDVYSFGVVLFEILCARPPLIHTAAPKQEVLANWVRYCYQSGIMQQIVDPALKGKIAPECFRKFCEIGVSCLLRDGTQRPSMKDVVEMLEFALQLQESADKRKNAGTVAE 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2207 813 CDD STKc_IRAK 510 793 - -
Ssu8g2207 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Ssu8g2207 813 Gene3D Transferase(Phosphotransferase) domain 1 595 811 - -
Ssu8g2207 813 Pfam Malectin-like domain 31 402 IPR024788 -
Ssu8g2207 813 PANTHER CARBOHYDRATE-BINDING PROTEIN OF THE ER PROTEIN 21 804 - -
Ssu8g2207 813 Pfam Protein tyrosine and serine/threonine kinase 510 792 IPR001245 GO:0004672|GO:0006468
Ssu8g2207 813 ProSiteProfiles Protein kinase domain profile. 504 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2207 813 PANTHER OS07G0166700 PROTEIN 21 804 IPR045272 GO:0004714|GO:0006468
Ssu8g2207 813 SMART serkin_6 504 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2207 813 Gene3D Phosphorylase Kinase; domain 1 489 594 - -
Ssu8g2207 813 SUPERFAMILY Protein kinase-like (PK-like) 477 794 IPR011009 -
Ssu8g2207 813 Gene3D - 28 185 - -
Ssu8g2207 813 Gene3D - 213 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2207 Ssu-Chr8 58115342 58117783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2207 18 804 Receptor kinase-like Gene Family AT3G51550 48.184 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g2207 Malectin_like 3.4e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2207 - - gmx:106795448 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2207 8 58115342 58117783 Ssu8g2207 8 58115342 58117783 ECH
Ssu3g0351 3 7341076 7343682 Ssu8g2207 8 58115342 58117783 PCT