Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2204 ATGGTCAGGCTCCACTTTTGCGAGCTTGACCCCAATATTAATGACATCGGTGATCGGGAGTTCTTCATTTACATAGCGAGTGACTTGGCTGAGGAGCGTGCTGATGTCATGAAATGGACCCAGAAACAGAAAGGTCTCGCTGTGTACAAAGACTACGCTGTTTTAATTCCCAAGAATGATACTCAGAAAAAGGTTAATCTCTCGCTTCAGCTGCATCCTTACGAAACTGCTAAGGATACGAAATACAGCGACCCGTTCTTGAACGGTCTCGAGATCTTCAAAATCAGTGCGTCTAATAACCTCGCCGGACCGAACCCGGACCCGGTTCAGACTCCACAGAACAACCAACCCGTCCAGAAAAGGGAAAAGAGCAAGAGCCGAACGACAATAATTGGGGTTGCCGCGGGAGTGGTATCTGGCGTCGTTTTGATCTCGTTTGTCGTTTACTTCGTCGCCTTGTTCGAGAGGAACACGACTTCCAAGTGGGGTCCACTCTCGTTCTCAACGACCAAGTCAACGAACACGCAGAAGTCCTCCCTGCCATCCGATCTCTGCCGCAACTTCTCCCTCGTCGAGATTGAAGCCGCCACCAACAACTTCGACGACGTCCTCATCATCGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTTCACCCCAGTCGCCATCAAGCGTCTCAAACCGGATTCGCAGCAAGGGGAGCACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTCCGCCACCTTCATCTCGTGTCCCTCATCGGGTACTGCTACGAGAACAACGAGATGATCCTCGTCTACGATTTCATGGCACGTGGCACCCTCCGCCAGCATCTTTACGACACCGACGACCCTCCTCTCTCGTGGAAGCAGCGCTTGCAGATTTGTATTGGAGCCGCGCGCGGGCTGCATTATCTCCACACAGGAGCGAGCACATGA 960 0.5312 MVRLHFCELDPNINDIGDREFFIYIASDLAEERADVMKWTQKQKGLAVYKDYAVLIPKNDTQKKVNLSLQLHPYETAKDTKYSDPFLNGLEIFKISASNNLAGPNPDPVQTPQNNQPVQKREKSKSRTTIIGVAAGVVSGVVLISFVVYFVALFERNTTSKWGPLSFSTTKSTNTQKSSLPSDLCRNFSLVEIEAATNNFDDVLIIGVGGFGHVYKGYIDGGFTPVAIKRLKPDSQQGEHEFMNEIEMLSQLRHLHLVSLIGYCYENNEMILVYDFMARGTLRQHLYDTDDPPLSWKQRLQICIGAARGLHYLHTGAST 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2204 319 ProSitePatterns Protein kinases ATP-binding region signature. 206 229 IPR017441 GO:0005524
Ssu8g2204 319 SUPERFAMILY Protein kinase-like (PK-like) 173 314 IPR011009 -
Ssu8g2204 319 MobiDBLite consensus disorder prediction 103 124 - -
Ssu8g2204 319 MobiDBLite consensus disorder prediction 103 119 - -
Ssu8g2204 319 Pfam Malectin-like domain 1 95 IPR024788 -
Ssu8g2204 319 PANTHER OS07G0166700 PROTEIN 2 318 IPR045272 GO:0004714|GO:0006468
Ssu8g2204 319 Gene3D - 1 98 - -
Ssu8g2204 319 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 2 318 - -
Ssu8g2204 319 SMART tyrkin_6 200 319 IPR020635 GO:0004713|GO:0006468
Ssu8g2204 319 Gene3D Transferase(Phosphotransferase) domain 1 182 319 - -
Ssu8g2204 319 Pfam Protein tyrosine and serine/threonine kinase 206 315 IPR001245 GO:0004672|GO:0006468
Ssu8g2204 319 ProSiteProfiles Protein kinase domain profile. 200 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2204 Ssu-Chr8 58038297 58039256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2204 1 317 Receptor kinase-like Gene Family AT3G51550 51.020 1.27e-98 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g2204 PK_Tyr_Ser-Thr 1.6e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2204 - - gmx:100799780 473.781