Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2203 ATGAGGTTCCCCGGTATCACCTCCTTAACACTCTTCCTTCTTCTCCACCTCTCCATACACCTCCAAGCCTACACCCCAGAGGAAGTTTTCACCATCAGTTGCGGAACCACCGCGAAATCCTTCGACGGCGAAAGGACATGGACGGGGGATGCAGACTCCAATTACTTATCTCGTCAAGACAGCATCGTTTCAGCTGAAGCAACAACACAACCTACTTCCGCCAATCAAGTTCCCTTCACCACAGCTCGCTTGTCCCGTTCACAGTTCAATTACTCCTTCCCCGTCTCTGCGGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCAGCTTCTTACCCTTCCTTTCCCCGCGCCGACGCCTACTTCACCGTTCAGTCCAACCAATTCACCCTCCTCAATGGTTTCAATTCCTCCCTAAATGCCGACGCTGAAAACACGGAAACCATCTTCAAAGAATACGTCGTCTATGTGGACGACGGTCAGAGACTTATCCTCAGCTTCACTCCGTCACAACCAAACTCCTACGCTTTCATCAACGGAATCGAGGTGTTGTCCATGCCCAGCGATCTCTATTACCCGTCAGCAAATGACGTGGACTTGACGCTCGTGGAAGTGGCACGTTATTCAGCGTCGGAACCAGCTCTGCTCTGGAGACAGAGTATAGAATCAAAGTGGGAGGGCAAGAAATCTCGCCACGAAACGACACCGGGTAATCTACCAGCTGACTCTGGTGGTAGGAACATAACTGTGAATCCTGATTACGTGGCACCCAAGGAACTGTACAGAACAGCTCGTGACATGGGCCCAAACGCCACTCTGAACAAAATCATCAACCTGACTTGGGAGTTCCCTGTTCATTCTGGCTTCGCTTACTTGCTCAGGCTCCACTTTTGCGAACTTGACCCCAGTATTACTGACGTTGGTTACAGGGTGTTCTTCATTTACATAGCGGGCCAGGTGGCTGAGGTGTACGCTGATGTTATGAAATGGAGCCACAGACAGAGAGGTCTCGCTGTGCACAAAGACTACGCTGTTTTAATTCCCAAGAATGATACTCAGAAAAAGGTTAATCTCTCACTTCAAATGCACCCTTATGAAAGTCTTATGTATACGAAATACAGCGACCCGTTCTTGAACGGTCTCGAGATCTTCAAAATCAGTGAGCCCGCGTCTAATAACCTCGCCGGACCGAACCCGGACCCGGTTCAGACTCCACAGAACAACATACCCGTCCAAAAAAGGGGAAAGAGCTACAGCCGAACGACAATAATTGGGGTTGCCGCGGGAGTGGCATCTGGCGTCGTTTTGATCTCGTTTGTCGTTTACTTCGCCGCCTTGTCCGCGAGGAACAAGACTTCCAAGTGGGGTCCACTCTCCTTCACAACAACCAAGTCAACGAACATGCAGAAGTCCTCCCTGCCGTCCGATCTCTGCCGCAACTTCTCCCTCGTCGAGATTGAAGCCGCCACCAACAACTTCGACGACGTCCTCATCATCGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTTCACCCCAGTCGCCATCAAGCGCCTCAAACCGGATTCGCAGCAAGGGGCGCACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTCCGCCACCTTCATCTCGTGTCCCTCATCGGGTACTGCTACGAGAACAACGAGATGATCCTCGTCTACGATTTCATGGCACGTGGCACCCTCCGCCAGCATCTCTACGACACCGACAACCCTCCTCTGTCGTGGAAGCAGCGCTTGCAAATTTGTATCGGTGCCGCGCGGGGGCTACATTATCTCCACACAGGTGCGAAGCACATGATCATCCACCGCGACGTGAAAACCACCAACATCTTGCTGGATGAAAACTGGGTGGCCAAGGTTTCGGACTTCGGGCTTTCCAGAATTGGGCCCACAGGCATGGACAAGGCCCATGTCAGCACCGTTGTAAAGGGCAGCTTTGGGTATTTAGACCCGGAGTGTTATAAACGGTACCGTTTGACGGAGAAGTCTGATGTGTACTCTTTTGGAGTAGTGCTGTTTGAGATACTATGCGCTCGGCCGCCTCTGATCCGCACCGCGGGAATGGAACAGGTGTCACTTGCTAATTGGGCCAGGAACTGTTACAAAAATGGGACCATGGCGCAGATTGTGGACCCTAAGTTGAAAGGGAGGATTGCGCCCGAGTGCTTCAAGAAGTTTTGCGAGATTGGGGTGAGTTGTTTGTTGGAGGATGGGACGCATAGGCCGTCCATGAACGACGTCGTTTGGATGCTGGAGTTTGTGCTGCAGCTACAAGAGAGCGCGGAGCagagcaaaaatgaaaaaggagaagaaattaGTTACGATACATTTAGTAATACTGTGCGCTCCGCATCCGCGCCGCGGAGTCGGAAGGAACAGGTGTCGCTTGCTAATTGGGCCAAGCATTGTTACAAAAGCGAGACTCTAGAGCAGATTGTGGACCCCACGTTAAAGGGGAGTATCGCGCCCGAGTGCTTCAGGAAGTTTTGCGAGACTGCGATGAGTTGTTTGTTAGAGGATGGGACGCAGAGGCCATCCATGAACGACATCGTTTGGATGCTGGAGTTTGCGCTACAACTGCGAGAGAGTGCGGAGCAGCGCAAAAATGCTGGAATTGTTACCGAGGAAGTTAACGGGAGAAGAGAGGAAATTAGTGTTGATATGTGTAGTAGTGCGATCAATGTGGGGCAGGTTTCGAATTTTAACAATAGCGGTGTGAATCAAACATATTCTGGTAACACTGTTGCTGCATAA 2793 0.5127 MRFPGITSLTLFLLLHLSIHLQAYTPEEVFTISCGTTAKSFDGERTWTGDADSNYLSRQDSIVSAEATTQPTSANQVPFTTARLSRSQFNYSFPVSAGPKFVRLFFYPASYPSFPRADAYFTVQSNQFTLLNGFNSSLNADAENTETIFKEYVVYVDDGQRLILSFTPSQPNSYAFINGIEVLSMPSDLYYPSANDVDLTLVEVARYSASEPALLWRQSIESKWEGKKSRHETTPGNLPADSGGRNITVNPDYVAPKELYRTARDMGPNATLNKIINLTWEFPVHSGFAYLLRLHFCELDPSITDVGYRVFFIYIAGQVAEVYADVMKWSHRQRGLAVHKDYAVLIPKNDTQKKVNLSLQMHPYESLMYTKYSDPFLNGLEIFKISEPASNNLAGPNPDPVQTPQNNIPVQKRGKSYSRTTIIGVAAGVASGVVLISFVVYFAALSARNKTSKWGPLSFTTTKSTNMQKSSLPSDLCRNFSLVEIEAATNNFDDVLIIGVGGFGHVYKGYIDGGFTPVAIKRLKPDSQQGAHEFMNEIEMLSQLRHLHLVSLIGYCYENNEMILVYDFMARGTLRQHLYDTDNPPLSWKQRLQICIGAARGLHYLHTGAKHMIIHRDVKTTNILLDENWVAKVSDFGLSRIGPTGMDKAHVSTVVKGSFGYLDPECYKRYRLTEKSDVYSFGVVLFEILCARPPLIRTAGMEQVSLANWARNCYKNGTMAQIVDPKLKGRIAPECFKKFCEIGVSCLLEDGTHRPSMNDVVWMLEFVLQLQESAEQSKNEKGEEISYDTFSNTVRSASAPRSRKEQVSLANWAKHCYKSETLEQIVDPTLKGSIAPECFRKFCETAMSCLLEDGTQRPSMNDIVWMLEFALQLRESAEQRKNAGIVTEEVNGRREEISVDMCSSAINVGQVSNFNNSGVNQTYSGNTVAA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2203 930 ProSitePatterns Protein kinases ATP-binding region signature. 498 521 IPR017441 GO:0005524
Ssu8g2203 930 Pfam Malectin-like domain 32 385 IPR024788 -
Ssu8g2203 930 Gene3D Transferase(Phosphotransferase) domain 1 569 791 - -
Ssu8g2203 930 Gene3D Transferase(Phosphotransferase) domain 1 792 885 - -
Ssu8g2203 930 CDD STKc_IRAK 498 765 - -
Ssu8g2203 930 SUPERFAMILY Protein kinase-like (PK-like) 464 767 IPR011009 -
Ssu8g2203 930 PANTHER OS07G0166700 PROTEIN 241 789 IPR045272 GO:0004714|GO:0006468
Ssu8g2203 930 ProSiteProfiles Protein kinase domain profile. 492 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2203 930 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 15 197 - -
Ssu8g2203 930 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 803 890 - -
Ssu8g2203 930 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 241 789 - -
Ssu8g2203 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Ssu8g2203 930 Pfam Protein tyrosine and serine/threonine kinase 498 762 IPR001245 GO:0004672|GO:0006468
Ssu8g2203 930 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Ssu8g2203 930 SMART serkin_6 492 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2203 930 PANTHER OS07G0166700 PROTEIN 15 197 IPR045272 GO:0004714|GO:0006468
Ssu8g2203 930 PANTHER OS07G0166700 PROTEIN 803 890 IPR045272 GO:0004714|GO:0006468
Ssu8g2203 930 SUPERFAMILY Protein kinase-like (PK-like) 796 875 IPR011009 -
Ssu8g2203 930 Gene3D - 215 386 - -
Ssu8g2203 930 Gene3D - 25 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2203 Ssu-Chr8 58008208 58014378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2203 794 930 Receptor kinase-like Gene Family AT3G51550 47.586 9.90e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g2203 Malectin_like 3e-33 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2203 - - gmx:100799780 1152.89