Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2201 ATGAGGTTCCTCAGTACCACCTCCTTAAcactcttcctcctcctcctccacctcTCCATACAACTCCAAGCGTACACCCCAGTGGACCAATTCACCATCAGTTGCGGCACCACCGGGAAATCCTTCGACGGCGAAAGGACATGGACGGGGGACATGGACTCAAAATACTTATCTAGTCAAGACAGCGCCGTTCCAGCTAAAGCAACAAGACTATCTCCTTCAACCAATCGAGTCCCATACACCACAGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCCGTTTCTGCAGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCTGCCTCTTACCCTTCCTTTCCCCGCACTGACGCATCCTTCACCGTTCAGTCCAACCAATTCACACTCCTCAACGGTTTCAACCCCTCTCTAAACGCCGATGCGGAAAACACAGAAACCGTCTTCAGAGAATACGTGGTCAACGTTGACGATAGTCAGAGGCTTATCCTCACCTTCACTCCCTCACAACCAAACTCCTACGCTTTCATCAATGGAATCGAAGTGCTGTCCATGCCAAGCGACCTGTATTACACGTCAGCAAATGACGTAGGATTCACGCTCGTGGGACACAACACGTCATTCAGTGTCGGAAGCAGCGCTGCGCTAGAGACAGATTATAGAATCAAAGTCGGAGGGCAAGCAATCTCGGTGCGAAACGATACCGGTCTGTTCAGGAACTGGGCTGGTCAAGATGAAGATTATTTAGGTAGACAAAATCCACTGAATAATGATCTACCAGGTGACTTGGATGGTAAGATGAACATAACCGTGAATCCTGATTACATGGCACCCAAGGAACTGTACAGAACATCGCGAGACATGGGCACAAACAGCACTCTGAACAAAATCCTCAACCTGACTTGGGAGTTCCCCGTTCATTCAGGCTTCACTTACATGGTCAGGCTCCACTTTTGCGAGCTTGACCCCAATATTAATGACATCAGTGATCGGGAGTTCTTCATTTACATAGCGAGTGACTTGGCTGAGGAGCGTGCTGATGTCATGAAATGGACCCAGAAACAGAAAGGTCTCGCTGTGTACAAAGACTACGCTGTTTTAATTCCCAAGAATGATACTCAGAAAAAGAGCAACTTCCCCATCCAAAAGGGAAAGAGCAGCAAGAGCCGAACGACAATAATTGGGGTTGCCGCGGGAGTGGTATCTGGCGTCGTTTTGATCTCGTTTGTCGTTTACTTCGTCGCCTTGTTCGAGAGGAACACGACTTCCAAGTGGGGTCCACTCTCGTTCTCAACGACCAAGTCAACGAACACGCAGAAGTCCTCCCTGCCATCCGATCTCTGCCGCAACTTCTCCCTCGTCGAGATTGAAGCCGCCACCAACAACTTCGACGACGTCCTCATCATCGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTTCACCCCAGTCGCCATCAAGCGTCTCAAACCGGATTCGCAGCAAGGGGAGCACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTCCGCCACCTTCATCTCGTGTCCCTCATCGGGTACTGCTACGAGAACAACGAGATGATCCTCGTCTACGATTTCATGGCACGTGGCACCCTCCGCCAGCATCTCTACGACACCGACGACCCTCCTCTCTCGTGGAAGCAACGCTTGCAGATTTGTATCGGAGCCGCGCGCGGGCTGCATTATCTCCACACAGGCGTGAAGCACATGATCATCCACCGCGACGTGAAAACCACCAACATCTTGTTGGATGACAAGTGGGTGGCCAAGGTTTCGGACTTCGGGCTTTCCAGAATTGGGCCCATGGGCATGGACAAGGCCCATGTTAGCACCGTTGTAAAGGCAGCTTTGGGTATTTAG 1902 0.5074 MRFLSTTSLTLFLLLLHLSIQLQAYTPVDQFTISCGTTGKSFDGERTWTGDMDSKYLSSQDSAVPAKATRLSPSTNRVPYTTARLSRSQFNYSFPVSAGPKFVRLFFYPASYPSFPRTDASFTVQSNQFTLLNGFNPSLNADAENTETVFREYVVNVDDSQRLILTFTPSQPNSYAFINGIEVLSMPSDLYYTSANDVGFTLVGHNTSFSVGSSAALETDYRIKVGGQAISVRNDTGLFRNWAGQDEDYLGRQNPLNNDLPGDLDGKMNITVNPDYMAPKELYRTSRDMGTNSTLNKILNLTWEFPVHSGFTYMVRLHFCELDPNINDISDREFFIYIASDLAEERADVMKWTQKQKGLAVYKDYAVLIPKNDTQKKSNFPIQKGKSSKSRTTIIGVAAGVVSGVVLISFVVYFVALFERNTTSKWGPLSFSTTKSTNTQKSSLPSDLCRNFSLVEIEAATNNFDDVLIIGVGGFGHVYKGYIDGGFTPVAIKRLKPDSQQGEHEFMNEIEMLSQLRHLHLVSLIGYCYENNEMILVYDFMARGTLRQHLYDTDDPPLSWKQRLQICIGAARGLHYLHTGVKHMIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPMGMDKAHVSTVVKAALGI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2201 633 PANTHER OS07G0166700 PROTEIN 16 382 IPR045272 GO:0004714|GO:0006468
Ssu8g2201 633 ProSitePatterns Protein kinases ATP-binding region signature. 470 493 IPR017441 GO:0005524
Ssu8g2201 633 Pfam Malectin-like domain 33 388 IPR024788 -
Ssu8g2201 633 Pfam Protein tyrosine and serine/threonine kinase 470 613 IPR001245 GO:0004672|GO:0006468
Ssu8g2201 633 PANTHER OS07G0166700 PROTEIN 382 632 IPR045272 GO:0004714|GO:0006468
Ssu8g2201 633 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 16 382 - -
Ssu8g2201 633 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 382 632 - -
Ssu8g2201 633 Gene3D - 216 403 - -
Ssu8g2201 633 Gene3D - 30 187 - -
Ssu8g2201 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Ssu8g2201 633 SUPERFAMILY Protein kinase-like (PK-like) 437 621 IPR011009 -
Ssu8g2201 633 ProSiteProfiles Protein kinase domain profile. 464 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2201 633 Gene3D Phosphorylase Kinase; domain 1 427 540 - -
Ssu8g2201 633 Gene3D Transferase(Phosphotransferase) domain 1 541 632 - -
Ssu8g2201 633 SMART serkin_6 464 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2201 Ssu-Chr8 57958368 57960421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2201 3 632 Receptor kinase-like Gene Family AT3G46290 36.524 4.23e-118 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g2201 Malectin_like 4.7e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2201 - - gmx:100799780 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2201 8 57958368 57960421 Ssu8g2201 8 57958368 57960421 ECH