Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2200 ATGAAGGAAGCCGGAAAGAGCCACAAGGCGAACGGAAAGTCGTCGCCGGAGACGCGGAAGGATCGGAAGTGTAAGAGAGAAACAGCGAATCACTCGCTCTCTACTGTGTGTGTAAGTGTGGGAGAGAAACATGGAATCAATCAATCGTTTAATTTCATCactgaagaagagaagaagatgaagacgAAGACGCCATTGAAGCAGCTCAAGCTCGCGGTTCCTGCTCAAGAAACCCCCATTACCTCTTTCCtGACTGCAAGTGGAACATTCCATGATGGAGATCTGCTCTTGAATCACAAAGGGTTGCGTCTCAtctctgaagaaaaaaaatcacggCCTTCAGATGGTAAGGAACTGGAATTCGACTTCTCGCTGGATGACTTTGAGACCATCAAAGTAATTGGAAAAGGGAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTTTGTTGGAAAATTGTTTGCTTTAAAGGTTATTCAAATGAATATACAAGAGCTTATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAAGCGTCACAGTGTCCACATGTCGTTGTTTGCTATCACTCATTCTATCATAATGGAGTTATATCTCTTGTGTTAGAATACATGGATCGTGGTTCTCTAGCAGATGTAATCAAACAAGTTAAAACAATTCTGGAACCATATCTTTCTGTGGTTTGTAAGCAGGTATTGCAAGGCCTTGTTTACCTGCATAATGAAAGACATGTAATACATAGGGACATTAAACCTTCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAGATTACTGATTTTGGTGTTAGTGCTATGCTTGCAAGCTCAATGGACCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCAGTGATATCTGGAGTTTGGGCATGGTAGTGCTCGAGTGTGCCATTGGACGATTTCCTTATATACAGTATGAAGATCAACAAAGCTGGCCTAGTTTTTATGAGCTTTTGGCAGCAATTGTGGAAAGCCCCCCACCTTTTGCTCCACCTGATCAGTTCTCCCCAGAGTTCTGTTCATTTGTATCTTCCTGCATCCAAAAGGATCCTCGAGATAGATTAACATCCTTTGAGCTTCTGGGTCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGGATTTTGGTAGGTAGCTTGGAACATCCTGTAAATTTCCCCATATAA 1242 0.3969 MKEAGKSHKANGKSSPETRKDRKCKRETANHSLSTVCVSVGEKHGINQSFNFITEEEKKMKTKTPLKQLKLAVPAQETPITSFLTASGTFHDGDLLLNHKGLRLISEEKKSRPSDGKELEFDFSLDDFETIKVIGKGSGGVVQLVRHKFVGKLFALKVIQMNIQELIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLSVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMDQRDTFVGTYNYMSPERISGSTYDYSSDIWSLGMVVLECAIGRFPYIQYEDQQSWPSFYELLAAIVESPPPFAPPDQFSPEFCSFVSSCIQKDPRDRLTSFELLGHPFIKKFEDKDLDLGILVGSLEHPVNFPI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2200 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Ssu8g2200 413 CDD PKc_MAPKK_plant_like 126 392 - -
Ssu8g2200 413 SUPERFAMILY Protein kinase-like (PK-like) 125 396 IPR011009 -
Ssu8g2200 413 Gene3D Phosphorylase Kinase; domain 1 98 207 - -
Ssu8g2200 413 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 60 412 - -
Ssu8g2200 413 Pfam Protein kinase domain 128 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2200 413 ProSiteProfiles Protein kinase domain profile. 128 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2200 413 MobiDBLite consensus disorder prediction 1 28 - -
Ssu8g2200 413 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Ssu8g2200 413 SMART serkin_6 128 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2200 413 Gene3D Transferase(Phosphotransferase) domain 1 209 403 - -
Ssu8g2200 413 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 60 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2200 Ssu-Chr8 57925931 57928924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2200 60 411 MAP Kinase Kinase Gene Family AT5G56580 84.136 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Ssu8g2200 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2200 K04368 - gmx:100786284 658.292