Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2197 ATGAGGTTCCTCAGTACCACCTCCTTCAcactcttcctcctcctccacctcTCCATACACCTCCAAGCGTACACCCCAGAGGAAGTTTTCACGATCAGTTGCGGCACCACCGGGAAATCCTTCGACGGCGAAAGGACATGGACGGGGGACGCAGACTCCAAGTACTTATTATCTGGTCAAGACGGCGCCGTTCCAGCTAAAGCAACAAGACAATCTCCTTCAACCAATCGAGTCCCATACACCACAGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCCGTTTCTGCAGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCTGCTTCTTACCCTTCCTTTCCCCGCACTGACGCATCCTTCACCGTTCAGTCCAACCAATTCACACTCCTCAACGGTTTCAACGCCTCTCTAAACGCCGATGCGGAAAACACAGAAACCGTCTTCAGAGAATACGTGGTCAACGTGGGCAACGGCGAGAGGCTGGACCTCAGCTTCACTCCATCGCAACCAAACTCCTACGCCTTCATCAACGGAATCGAGGTACTTTCCATGCCGAGCGACCTGTATTACACGTCAGCAACTGACGTGGGATTCAAGTTCCTGGGAAGTGACACCCTGTACAGCGTCGGAACCAGCTTGGCGCTGGAGACAGAGTATAGAATCAAAGTGGGAGGGCAAGAAATCTCGCCACGGAACGACACCGGTTTGTTCAGGAACTGGGCTGGTCACGATGAAGATTATTTAACGACACCAATTCTAAAGGATAATCTACCACTTGACGATGGTGGTAGGAACATAACCGTGAATCCTGATTACGTGGCACCCAAGGAACTTTACAGAACAGCGCGTGACATGGGCAAAAACGCCACTCTGAACCAAGGCCTCAACTTGACTTGGGAGTTCCCCGTTGATACTGGCTTCACTTACATGGTCAGGCTCCACTTTTGTGAACTTGACCCCAATATTACTGACCTCGGTTACAGGGTGTTCTTCATTTACATAGCGAGCCAGGTGGCTGAGGACCACGCTGATGTTATGAAATGGAGCCAGAGACAGAGAGGTCTCGCTGTGTACAGAAACTACGCCGTTTTGATTCCCAAGAATAATGCTCAAAAAAAGGTTAATCTCTCGCTTCAAATGCATCCTTATGGAAATAGCAGGGATAAGATATACAGCGACCCGTTCTTGAACGGTCTCGAGATATTCAAAATCAGTGACCCCGGGACTAACAACCTCGCCGGACCTAACCCGGACCCGGTTCAGACTCCACAGAGCAACATCCCCGTCCAAAAGGGAAAAAGCAGCAGCGGAAGTGGAACGACGATAATTGGTGTCGTCGCGGGGGTGCTATCCGGCGTCGTCTTGATCTCCTTTGTCGTTTTCTTCGTCTTCAAGTGCGGTCCTCTCTCGTTCTCAACGACCAAGTCAACCAACACACGCAATCCCTCGTTGCCGTCCGATCTCTGCCGTCGCTTCTCCCTCGTCGAGATCAAAGCCGCCACCAACAACTTCGACGACGTCTTCATCGTCGGCGTCGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGGCGGTTCCACACCGGTGGCCATCAAGCGCCTCAAACCGGATTCGCAGCAGGGGGCACGCGAGTTCGTGAATGAGATCGAGCTGCTCTCGCAGCTCCGCCACCGCCATCTCGTCTCGCTCATCGGCTACTGCAACGACAGCAAGGAGATGATCCTCGTCTATGACTTCATGGCACGTGGCAACCTCCGCGACCATCTCTACAACACCGATAACCCCCCTCTCTCGTGGAAGCAACGCTTGCAGATTTGCATCGGGGCCGCGCGTGGGCTGCATTATCTTCACACAGGCGCGAAGCACATGATCATCCACCGCGACGTGAAAACCACCAATATCCTGTTGGATGATAGATGGGTGGCCAAGGTTTCGGACTTCGGGCTATCCAGAATTGGGCCCATGGGCACGTCCAAGGCCCATGTCAGCACCGCTGTAAAGGGCAGCTTTGGGTATTTAGACCCGGAGTATTATAAACGGTACCGTTTGACGGAGAAATCTGACGTGTACTCTTTTGGGGTAGTGTTGTTTGAGATACTGTGTGCTCGGCCAGCTCTGATCCGCACTGCAGAAACGCAACAGGTGTCGCTTGCTAATTGGTCAGGCGCTGTTACCAAAGTGGGACTGTAG 2199 0.523 MRFLSTTSFTLFLLLHLSIHLQAYTPEEVFTISCGTTGKSFDGERTWTGDADSKYLLSGQDGAVPAKATRQSPSTNRVPYTTARLSRSQFNYSFPVSAGPKFVRLFFYPASYPSFPRTDASFTVQSNQFTLLNGFNASLNADAENTETVFREYVVNVGNGERLDLSFTPSQPNSYAFINGIEVLSMPSDLYYTSATDVGFKFLGSDTLYSVGTSLALETEYRIKVGGQEISPRNDTGLFRNWAGHDEDYLTTPILKDNLPLDDGGRNITVNPDYVAPKELYRTARDMGKNATLNQGLNLTWEFPVDTGFTYMVRLHFCELDPNITDLGYRVFFIYIASQVAEDHADVMKWSQRQRGLAVYRNYAVLIPKNNAQKKVNLSLQMHPYGNSRDKIYSDPFLNGLEIFKISDPGTNNLAGPNPDPVQTPQSNIPVQKGKSSSGSGTTIIGVVAGVLSGVVLISFVVFFVFKCGPLSFSTTKSTNTRNPSLPSDLCRRFSLVEIKAATNNFDDVFIVGVGGFGHVYKGYIDGGSTPVAIKRLKPDSQQGAREFVNEIELLSQLRHRHLVSLIGYCNDSKEMILVYDFMARGNLRDHLYNTDNPPLSWKQRLQICIGAARGLHYLHTGAKHMIIHRDVKTTNILLDDRWVAKVSDFGLSRIGPMGTSKAHVSTAVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCARPALIRTAETQQVSLANWSGAVTKVGL 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2197 732 Gene3D Transferase(Phosphotransferase) domain 1 583 730 - -
Ssu8g2197 732 ProSitePatterns Protein kinases ATP-binding region signature. 512 535 IPR017441 GO:0005524
Ssu8g2197 732 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 15 726 - -
Ssu8g2197 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Ssu8g2197 732 Gene3D - 25 187 - -
Ssu8g2197 732 Gene3D - 215 407 - -
Ssu8g2197 732 SMART serkin_6 506 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2197 732 PANTHER OS07G0166700 PROTEIN 15 726 IPR045272 GO:0004714|GO:0006468
Ssu8g2197 732 Pfam Malectin-like domain 32 406 IPR024788 -
Ssu8g2197 732 ProSiteProfiles Protein kinase domain profile. 506 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2197 732 Pfam Protein tyrosine and serine/threonine kinase 512 705 IPR001245 GO:0004672|GO:0006468
Ssu8g2197 732 Gene3D Phosphorylase Kinase; domain 1 491 582 - -
Ssu8g2197 732 SUPERFAMILY Protein kinase-like (PK-like) 479 716 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2197 Ssu-Chr8 57873299 57875497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2197 19 732 Receptor kinase-like Gene Family AT3G51550 49.069 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu8g2197 Malectin_like 8e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2197 - - gsj:114381619 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2197 8 57873299 57875497 Ssu8g2197 8 57873299 57875497 ECH