Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2196 ATGCACCGTGCGGTGAAATCAAGCAACATTCTTTTGGACCATAATTTGGTGCCTAAAGTGGCAGATTTTGGACTCTACAAGAAGCATCCCGAAGGGAAGTCAAGGCCAAAACCACCAAGAGTTGAGAGAGGGAGAACTTGCAGGAAAAAAGCATGTTTTTTGAGCCCAGGTGGAGATTGTGAGTACCTTGTCAAGTAG 198 0.4545 MHRAVKSSNILLDHNLVPKVADFGLYKKHPEGKSRPKPPRVERGRTCRKKACFLSPGGDCEYLVK 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2196 65 Gene3D Transferase(Phosphotransferase) domain 1 1 63 - -
Ssu8g2196 65 ProSiteProfiles Protein kinase domain profile. 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2196 65 SUPERFAMILY Protein kinase-like (PK-like) 1 35 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2196 Ssu-Chr8 57867774 57868075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2196 1 31 Receptor kinase-like Gene Family AT5G59700 70.968 6.18e-09 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g2196 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2196 - K13435 vun:114182620 99.7525