Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2193 ATGGCCTCATCCGAGATTAACTGGGACAGGTTAGATAAAACGAAGTTCTATGTCGTGGGAGCGGGGCTCTTTACGGGTGTTACGGTGGCACTCTACCCGGTTTCTGTTGTGAAGACTAGGCTGCAGGTTGCTTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGATTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACGGTAATCACTGGTGCGATTCCTGCCAGAATCATATTCCTCACTGCCTTGGAGACGACAAAAGTGGCTTCCCTCAGGATGCTGGAGCCATTTAGACTATCTGAAGCTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCGCTGTGTTCACAAGCTGTGTTTGTTCCAATTGATGTGgTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGACGGAATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAAGTTATGGCTCAAGTCAACGCTTCTTATGGAGATTCTTGGGAGATAGCAACGAACTTACTCCGAGTCTACCAAAGATTATTTTAGTTCAAGCCACTGGAGGGATTATTGCTGGTGCTACTGCATCCTGCATTACAACCCCATTGGATACTATAAAGACACGGTTACAGGTGATGGGACATGAAAAGAGAATCTCTGTAAAACAAGTTGTTAAAGACTTGATCATTGAGGATGGTTGGAGAGGCTTATATAGAGGATTAGGTCCAAGATTTTTCAGCATGTCGGCGTGGGGTACTTCAATGATATTGACTTACGAATATCTGAAGCGCTTGTGTGCAAAAGATGAGGCAATTGATGTGTAA 936 0.4455 MASSEINWDRLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIPGLYKGFGTVITGAIPARIIFLTALETTKVASLRMLEPFRLSEATQAAIANGIAGMASSLCSQAVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFLWRFLGDSNELTPSLPKIILVQATGGIIAGATASCITTPLDTIKTRLQVMGHEKRISVKQVVKDLIIEDGWRGLYRGLGPRFFSMSAWGTSMILTYEYLKRLCAKDEAIDV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2193 311 PRINTS Mitochondrial carrier protein signature 226 248 IPR002067 GO:0055085
Ssu8g2193 311 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Ssu8g2193 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Ssu8g2193 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Ssu8g2193 311 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 1 308 - -
Ssu8g2193 311 Pfam Mitochondrial carrier protein 21 96 IPR018108 -
Ssu8g2193 311 Pfam Mitochondrial carrier protein 222 306 IPR018108 -
Ssu8g2193 311 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Ssu8g2193 311 SUPERFAMILY Mitochondrial carrier 9 299 IPR023395 -
Ssu8g2193 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Ssu8g2193 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 302 IPR018108 -
Ssu8g2193 311 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 308 - -
Ssu8g2193 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Ssu8g2193 311 Gene3D Mitochondrial carrier domain 17 309 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2193 Ssu-Chr8 57773958 57780896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2193 6 307 Chloroplast and Mitochondria Gene Families AT5G15640 78.502 7.31e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2193 K15121 - gmx:100819519 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2193 8 57773958 57780896 Ssu8g2193 8 57773958 57780896 ECH
Ssu8g2193 8 57773958 57780896 Ssu3g0334 3 6321915 6325585 PCT