Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2191 ATGCTTTTCTGTTTCGGCTTCGCACCACGATCCGATCCTTCCTCAAACCCGGTCCATGCATTCTGCTTTTGCTTCTGCTCTCTTGCACGTGCTTCACTGCAACAGTATGTTATAGCAAGACTTAGAGAAGCTTATGATCCACTTGATCCAAATGGAAATATCACAATCAGATGGGATATTATAAGTTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAAGAATATCGTCATATCTCAGCGCCTGGGTGGTCACTAGGATGGACATGGGCAAAGAAAGAGGTAATATGGAGCATGGTGGGAGGGCAGGCCACTGAACAAGGGGATTGTTCAAAATATAAGGGGAACATCCCGCATTGCTGTAAAAAGAGCCCAACAGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAACTGCTGCAAAGGTGGTGTACTCAGCTCATGGGTGCAGGATCAATCCAAGGCGGTTGCAGCATTTCAAGTCAGTGTAGGTAGTGCTGGTACCACTAACAAAACTGTCAAACTGCCAAAAAATTTCACCTTGAAAGCACCAGGACCTGGTTATACATGTGGGCTGGCAAAAATTGTGAAACCAACTCGATTCATAACACCAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTTGCTCAGAGAACACCCACTTGCTGCGTCTCGCTCTCATCTTTCTATAACGAAACTGTTGTACCCTGCCCATCATGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGGGACTGTGTAGATCCAGATTCACCACATTTGGAATCAGTTGTTTCGAACCCTGGACCTGGACAGAGTAGTATTACACCTTTGGTTCGATGTACTCGTCATATGTGCCCAATCCGAGTTCATTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCAcgattactaattttaattacaggATGAATTATTCTGATTGGAACTTGGTTATTCAACATCCAAACTTTGACAATCTGACCCAGCTTTTCAGTTTCAACTACGAGCCAATAACTCCCTACGGGTCAATAAACGATACGGCAATGCTTTGGGGAATTAAGTTCTACAATGATTTTCTCATGCAAGCTGGCCCTACTGGTAATGTACAGTCAGAGCTATTATTCAGAAAGGATAAATCAACGTTCACTTTTGACAAGGGTTGGGCCTTCCCTCGGAGAGTCTATTTCAATGGTGACGTCTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCTAATGCTGGTTCCAGGCAAGAGGTTTCCCTGCTTGCTTTGGTGATGACCTCTATGGTAGCCTTTGTATTTTATGCATATGCTTAA 1398 0.4378 MLFCFGFAPRSDPSSNPVHAFCFCFCSLARASLQQYVIARLREAYDPLDPNGNITIRWDIISWTPDGYVAVVTMNNFQEYRHISAPGWSLGWTWAKKEVIWSMVGGQATEQGDCSKYKGNIPHCCKKSPTVVDLLPGTPYNQQIANCCKGGVLSSWVQDQSKAVAAFQVSVGSAGTTNKTVKLPKNFTLKAPGPGYTCGLAKIVKPTRFITPDKRRVTQALMTWNVTCTYSQFLAQRTPTCCVSLSSFYNETVVPCPSCACGCQGNSSQSGDCVDPDSPHLESVVSNPGPGQSSITPLVRCTRHMCPIRVHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNLVIQHPNFDNLTQLFSFNYEPITPYGSINDTAMLWGIKFYNDFLMQAGPTGNVQSELLFRKDKSTFTFDKGWAFPRRVYFNGDVCVMPPPDAYPWLPNAGSRQEVSLLALVMTSMVAFVFYAYA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2191 465 PIRSF COBRA 16 465 IPR006918 GO:0010215|GO:0031225
Ssu8g2191 465 PANTHER PROTEIN COBRA 34 464 IPR006918 GO:0010215|GO:0031225
Ssu8g2191 465 PANTHER COBRA-LIKE PROTEIN 34 464 - -
Ssu8g2191 465 Pfam COBRA-like protein 68 231 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2191 Ssu-Chr8 57746879 57751333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2191 43 460 COBRA Gene Family AT3G02210 75.895 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2191 - - gmx:100815926 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2191 8 57746879 57751333 Ssu8g2191 8 57746879 57751333 ECH
Ssu3g0333 3 6316725 6320302 Ssu8g2191 8 57746879 57751333 ECH
Ssu8g2191 8 57746879 57751333 Ssu3g0333 3 6316725 6320302 PCT
Ssu3g0332 3 6303767 6307063 Ssu8g2191 8 57746879 57751333 PCT