Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2190 ATGAGGCTTGTCGTCTCAGCTCTTTGTGTTCTTGTGTTACTATCTTATGCAGTTGCTTATGATCCCTTGGATCCAAACGGAAACATAACAATCAAATGGGATGTAATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACACTTAACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACATTGGGATGGACATGGGCCAAGAAAGAAGTCATTTGGTCCATGGTAGGAGCTCAAACCACAGAACAAGGAGACTGCTCTAAGTTCAAAGGCAACATACCTCATTGTTGCAAGAAAATTCCCACAGTTGTAGACCTGCTCCCTGGTGTACCTTACAACCAGCAATTCACAAACTGCTGTAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACCTCAAACAAGACAGTTAAACTCCCCAAGAATTTCACTCTCTTGGCTCCAGGACCAGGCTATACTTGTGGCCCTGCAAAGGTTGTTCCATCCACCACTTTCCTTACGCCTGACAAGCGCCGCAAGACTCAAGCGCTAATGACATGGAATGTTACCTGCACATACTCACAGTTTCTGGCAAGAAAGAACCCAAGTTGTTGCGTATCTTTGTCATCCTTCTATAATGAAACCATTACCCCATGTCCCTCTTGTGCCTGTGGCTGCCAGAACAAGAAGAATTGTGTGAAGAGTGACTCCAAAATTCTCAGCATGGTGGGGGTTCACACCCCAAAGAAAGACAATGAACCATTGCTTCAGTGCACTCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGCTCAACTATAAGGACTACTGGCGAGTCAAGATTGCCGTAACAAACTTCAATTACAGGATGAATTACTCCCTCTGGACTCTTGCTATTCAGCATCCGAATCTTAACAATCTCACCCAAGTTTTCAGTTTTGATTACAAGCCTATTCTTCCCTATGAGTCCATAAATGACACTGGCATGTTCTATGGAATGAAATACTTCAATGATCTTCTAATGGAAGCTGGGCCAACTGGGAATGTTCAATCAGAGGTGCTTCTTCAGAAGAACAAGGATACATTCACATTCAAGCAGGGATGGGCATTTCCTCGCAAGGTCTACTTTAATGGTGATGAATGCATGCTGCCCCCACCTGACACCTACCCGTTTCTTCCTAACTCTGCACCTGCAAGCCTACTTACCTTCCCAGCattgattttcttattgtttttcttgCTAGCAATTTGGTAA 1296 0.4452 MRLVVSALCVLVLLSYAVAYDPLDPNGNITIKWDVMSWTPDGYVAVVTLNNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTSNKTVKLPKNFTLLAPGPGYTCGPAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKSDSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAVTNFNYRMNYSLWTLAIQHPNLNNLTQVFSFDYKPILPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSEVLLQKNKDTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNSAPASLLTFPALIFLLFFLLAIW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2190 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Ssu8g2190 431 PANTHER COBRA-LIKE PROTEIN 4 429 - -
Ssu8g2190 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0031225
Ssu8g2190 431 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2190 Ssu-Chr8 57743206 57745901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2190 19 427 COBRA Gene Family AT3G29810 68.932 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2190 - - gmx:100798678 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2190 8 57743206 57745901 Ssu8g2190 8 57743206 57745901 ECH
Ssu3g0332 3 6303767 6307063 Ssu8g2190 8 57743206 57745901 ECH
Ssu8g2190 8 57743206 57745901 Ssu3g0332 3 6303767 6307063 PCT
Ssu3g0331 3 6301158 6303092 Ssu8g2190 8 57743206 57745901 PCT