Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2188 ATGGCTGACACTACTTCTGTGGCACCAACACCTCAACTGAAAGATGAGCTTGACATTGTGATCCCCACCATAAGGAACCTTGACTTTCTTGAAATGTGGAGGCCATTCTTTCAGCCTTATCATTTGATCATTGTGCAGGATGGTGACCCCACCAAAACCATTAAGGTTCCTCCTGGTTTTGACTATGAACTCCACAACCGCAATGACATCAACAAGCTTTTGGGTCCAAGGGCCTCTTGCATCTCCTTTAAGGACTCTGCTTGCCGCTGCTTTGGCTACATGGTGTCTAAGAAGAAGTACATCTACACCATTGATGATGACTGTTTTGTTGCTAATGATCCATCTGGAAAAGCGATTAATGCACTTGAGCAGCATATTAAGAACCTTCTCTGTCCATCCACTCCCTACTTCTTCAATACCCTTTATGACCCCTTCAGAGAAGGTGCAGATTTTGTTCGTGGATACCCTTTTAGTTTTCGTGAAGGTGTACCAACTGCTGTTTCCCATGGACTGTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTTGAAAGGAACACTAGGTATGTGGATGCTGTTCTGACCATACCAAAAGGCACTTTATTTCCCATGTGTGGAATGAACTTGGCGTTCGATCGTGATCTGATTGGACCAGCAATGTACTTTGGTCTCATGGGAGATGGTCAACCAATTGGACGCTATGATGATATGTGGGCTGGCTGGTGCTGCAAGGTGATCTGTGATCATTTGGGGCTGGGAATCAAGACTGGTCTGCCCTATATCTATCACAGCAAGGCCAGTAACCCATTTGTAAACCTGAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATTATTCCATTCTTCCAGAATGTTGTTCTTCCAAAAGAGTGCACCACTGTTCAGAAGTGCTACATTGAGCTCTCCAAGCAAGTCAAGGAAAAGCTTTCGAAGGTAGATCCTTACTTTGACAAGCTGGCAGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTTAACCCTGCTGGAGCATCTCAGGCCAATAGCAAAGCATAA 1077 0.454 MADTTSVAPTPQLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIKVPPGFDYELHNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVANDPSGKAINALEQHIKNLLCPSTPYFFNTLYDPFREGADFVRGYPFSFREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVICDHLGLGIKTGLPYIYHSKASNPFVNLRKEYKGIFWQEDIIPFFQNVVLPKECTTVQKCYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGASQANSKA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2188 358 PANTHER UDP-ARABINOSE MUTASE 7 354 IPR037595 -
Ssu8g2188 358 Pfam Reversibly glycosylated polypeptide 14 347 IPR037595 -
Ssu8g2188 358 SUPERFAMILY Nucleotide-diphospho-sugar transferases 37 247 IPR029044 -
Ssu8g2188 358 PIRSF UPTG 7 351 IPR004901 GO:0016866|GO:0071669
Ssu8g2188 358 PANTHER ALPHA-1,4-GLUCAN-PROTEIN SYNTHASE [UDP-FORMING]-LIKE PROTEIN 7 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2188 Ssu-Chr8 57690552 57693052 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2188 K13379 - gmx:100778357 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2188 8 57690552 57693052 Ssu1g2011 1 57050001 57052399 ECH
Ssu8g2188 8 57690552 57693052 Ssu8g2188 8 57690552 57693052 ECH
Ssu2g1451 2 60089939 60093067 Ssu8g2188 8 57690552 57693052 ECH
Ssu8g2188 8 57690552 57693052 Ssu3g0329 3 6273932 6276060 PCT