Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2181 ATGGGGAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGTCAAGTGACGTTTTCCAAACGGAGAACGGGGCTGCGCAAGAAGGCTCATGAAATCTCTGTGCTGTGTGATGCTCAAGTAGCATTGATTGTGTTCAATGCTAAAGGGAAACTTTTCGATTATTCATCTGAATCCAGCATGGAAAACGTCTTGGAACGATATGAGAGACATGACCATATAGGGCAACTTGTTGGAGATGGTGATGAATCACAGGTACCTCATCGGACCCTAGCTTTTATTAATATCTATGCCAATTTAAGACTATGTATATCCCTTCTGAACTGTGTGGGACAAGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCTGCTTGACACAGCTCTAAAGCGCATCCGAACTAGAAAGAACCAAGTTATGAATCAATCCATCTCAGATCAGCAGAAAAAGGTAAGGGGTTGGGAACAGGGGGATTTACTATTGGATATTGGCGTGCATATGCATTACTAG 528 0.4394 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFDYSSESSMENVLERYERHDHIGQLVGDGDESQVPHRTLAFINIYANLRLCISLLNCVGQDLDPLSLRELQSLEHLLDTALKRIRTRKNQVMNQSISDQQKKVRGWEQGDLLLDIGVHMHY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2181 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 159 - -
Ssu8g2181 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 Pfam K-box region 107 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu8g2181 175 PANTHER MADS BOX PROTEIN 1 159 - -
Ssu8g2181 175 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ssu8g2181 175 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Ssu8g2181 175 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Ssu8g2181 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ssu8g2181 175 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2181 Ssu-Chr8 57438634 57450118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2181 1 167 MADS-box Gene Family AT1G26310 55.491 2.41e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu8g2181 K-box 7.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2181 K09264 - gmx:100787971 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0320 3 5872175 5882279 Ssu8g2181 8 57438634 57450118 PCT