Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2180 ATGGGTTCTGTTTGTTGTTGTGTGAGTTATGATGATTTTGAAGATTATGTAAATCCAAATAGTCCTGTATATAGGAACTGCACGTGTCTCAGTTGCTTGATACAGAACCTTTTGAATGTGTATGCATCAATATTCCGTAGAGGGGATGTACATTCAATTCCTTCATCTATTCAGGGGGCAGCATCTATAAATTCTGCAGCATCACTTGATAATTCTCTGTCTGACATGTACCGTTCTCCTCCAAGGCCATTACCATATGATACAGAACCCAGATATTTTCGCTCACAACGTGATGGACTAGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCGAATGAGGAAACAGAACCTCTAAGAAATGATTTAGATGTGGATCCAGAGTCTTTAAATTCAGGAGACAAATGGAATGGAAGTGCTTGTGAAGCTGGATCAAAGGAATACCATTCTAAGTCCTCGCTAAGACTTCCAACAAAATATTTAGCTGGAGTTGGCCTTGTCTATTCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACCAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGACTTTCACTTGA 687 0.3974 MGSVCCCVSYDDFEDYVNPNSPVYRNCTCLSCLIQNLLNVYASIFRRGDVHSIPSSIQGAASINSAASLDNSLSDMYRSPPRPLPYDTEPRYFRSQRDGLVSRREKGSSHSNEETEPLRNDLDVDPESLNSGDKWNGSACEAGSKEYHSKSSLRLPTKYLAGVGLVYSSSEEEDVCPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTFT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2180 228 MobiDBLite consensus disorder prediction 98 136 - -
Ssu8g2180 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 225 - -
Ssu8g2180 228 SMART ring_2 176 216 IPR001841 -
Ssu8g2180 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Ssu8g2180 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 223 IPR013083 -
Ssu8g2180 228 MobiDBLite consensus disorder prediction 98 128 - -
Ssu8g2180 228 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Ssu8g2180 228 SUPERFAMILY RING/U-box 171 223 - -
Ssu8g2180 228 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2180 Ssu-Chr8 57376887 57381891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2180 1 225 C3H Transcription Factor Family AT5G15790 60.345 4.86e-93 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2180 - - gmx:100777068 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2180 8 57376887 57381891 Ssu8g2180 8 57376887 57381891 ECH