Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2172 ATGGTTCGTCAAGCTGATTTAGTTATCATTGGCGTTTCTGTTGGTGTGACACTTGGAATTCTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAACGTGCTCATCTTAGACGATCTGCAAATGAGTCTAGTGTAACAACTCTTCCAATACGAACAAATGGATTGGGAACAAGTACTGACTTTAGTGCATCTCTTGATAGTTCCATAGCCACGTCAAGGTCAGAAAATCTAAAGAAAAATTCCCATTTCAGTTGGTGGAATCATCAAAAGAAAGATCGGTTTTCTTCAGCATCAGGCATTCTAAAGTATTCGTACAAAGAAATTCAAAAGGCCACACAAAATTTCACGACTACCTTGGGACAAGGATCATTTGGTACAGTTTATAAGGCGACAATGCCTACAGGGGAGGTTGTAGCAGTGAAGGTGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATATTGTGTAGATAAAGGTCAACGCATACTGGTTTATCAGTACATGAGTAATGGAAGTTTAGCAAATCTTTTATATGGTGAAGAAAAGGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTCTTGATATTTCACAAGGAATAGAATACCTTCATGAAGGAGCGATCCCACCTGTCATACATCGCGATTTAAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGGAATTCTGGTCTTAAAGGGGGACCAACCGAGAGCAGCTTATGTATACGTAGCCAAGAAACGGGGAAGGCAATTGGTATAAACATGCACCACGTGGAATCCAAATTCACCAAAAGGTTCTGTCTTTTTTGTGTGGTGACCGTTTTATGCATCTCTTTGTGCGTTGGAGGTTTTCATGCAAAGAAGTGCGCAGAGACAGACAAGCAAGCTCTTCTCAAGTTAAAAGATGGTTGCATTCATGGAAGGCACATTCTATCTTCGTGGAAAGGTTGTGAGCGCATGATCTTGGcctcaaatttcacattttatagagCCAAAGTTCATAATCAATCGTCAACAATTGAGATGATCCAATCTCTATTTAAGTATGTGTCTGACATTGAGGATGAGGATATGATCAAGTGCGAGCATATTCTCTAA 1224 0.4003 MVRQADLVIIGVSVGVTLGILISCLIFFGIRWYKKRAHLRRSANESSVTTLPIRTNGLGTSTDFSASLDSSIATSRSENLKKNSHFSWWNHQKKDRFSSASGILKYSYKEIQKATQNFTTTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFQTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMSNGSLANLLYGEEKELSWDERLQIALDISQGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGGPTESSLCIRSQETGKAIGINMHHVESKFTKRFCLFCVVTVLCISLCVGGFHAKKCAETDKQALLKLKDGCIHGRHILSSWKGCERMILASNFTFYRAKVHNQSSTIEMIQSLFKYVSDIEDEDMIKCEHIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2172 407 SUPERFAMILY Protein kinase-like (PK-like) 98 268 IPR011009 -
Ssu8g2172 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Ssu8g2172 407 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Ssu8g2172 407 ProSiteProfiles Protein kinase domain profile. 116 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2172 407 SMART serkin_6 116 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2172 407 Gene3D Transferase(Phosphotransferase) domain 1 192 288 - -
Ssu8g2172 407 Gene3D Phosphorylase Kinase; domain 1 77 191 - -
Ssu8g2172 407 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 275 - -
Ssu8g2172 407 Pfam Protein tyrosine and serine/threonine kinase 118 264 IPR001245 GO:0004672|GO:0006468
Ssu8g2172 407 PANTHER OS01G0750732 PROTEIN 9 275 - -
Ssu8g2172 407 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2172 Ssu-Chr8 57136964 57146342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2172 102 277 Receptor kinase-like Gene Family AT3G19300 50.000 1.68e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Ssu8g2172 PK_Tyr_Ser-Thr 2.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2172 - - gmx:100819995 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2172 8 57136964 57146342 Ssu8g2172 8 57136964 57146342 ECH
Ssu8g2172 8 57136964 57146342 Ssu3g0300 3 5555538 5562556 PCT