Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2157 ATGGCAATTGAAAGTATTGAACCCAAGACAAAgaagacaaaaccaaggaagaACAAGGCAGTTGTTGATGAGAAGGCACCTTTGATACCTAAGACTCAGAAGACTGAATCTGATGCTGAAGGGTTTCATGATTTCAATGGCGCTTCATTTTCTGGGGCAGTTTTCAACTTGTCCACCACAATTATTGGTGCTGGGATCATGGCCTTGCCTGCAACCGTGAAAAAGTTGGGGATGGTGCCTGGTCTTCTTGCTATAATCTTAACTGCTTTTTTGACAGAGAAGTCAATTGGGTTCATGATTAGGATTTCCCGGGCGGGGAAACTTTCTTCTTATGGGAATCTCGTGGGGGATGCATTTGGCAAGTTTGGAAAAGCTCTTGTGCAGATATGTGTTATAGTCAACAACATTGGAATGCTGATTATTTACATGATTATTATTGGTGATGTGATTTCTGGAACATCTTCAAATGGAACTCATCATTCTGGTGTGCTTGAAGGATGGTTTGGAGTTCACTGGTGGACAGGACGTACATTTGTTCTTATTTTCACAACATTTGCTGTGTTTGCACCTTTGTCCTGCTTCAAGCGAATTGATTCATTGAGATACACTTCTGCGTTATCGTTTGGTTTAGCACTTGTTTTTCTCGTCATTGCTGTGGGAATCTCAATTTTCAAGATTGCAATTGGAGGCATTGGGATGCCTAGACTCTTCCCGATCATTACTGATGTAGCCTCAGTTTTTGAACTGTTCACTGTAACTCCTGTGATTGTGACAGCCTATCTGTGCCACTTCAATGtaaACCCAATTGCTAATGAACTTGAGGACTCCTCACAGATTCATGGGATTGTGCGTACTTCCCTTGCCCTATGTGCTTCAGTGTACTTACTGACAAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGATACTGATCTAGGAATTCCTTTTGGTTCTGTGCTCAATGATGCTGTTCGTTTTAGCTATGCTGCACATCTTGTGCTTGTATTTCCGGTTGTCTTCTATGCAGTGCGGATCAACCTAGATGGTCTTCTATTTTCATCATCTAAGCCTTTGGTTCTGGATAACTTCAGATTTGCATCAATTACCATTGCCCTTATTGGTGTTGTCTTCTTGGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGCATGTTTATCATTCATATTTCCAGCTGCCATCACCCTTAGgGATCGGTACAACATTGCAACTAAAAAAGACAAGATTCTATCTGTCTTTATGATAGTCCTCGCAGTCTTGGCTAATGTTGTGGCTATATACAGTGATGCCTTTGCCTTGATCAAGAATAGTATAACTCAACGTGAGTGA 1401 0.409 MAIESIEPKTKKTKPRKNKAVVDEKAPLIPKTQKTESDAEGFHDFNGASFSGAVFNLSTTIIGAGIMALPATVKKLGMVPGLLAIILTAFLTEKSIGFMIRISRAGKLSSYGNLVGDAFGKFGKALVQICVIVNNIGMLIIYMIIIGDVISGTSSNGTHHSGVLEGWFGVHWWTGRTFVLIFTTFAVFAPLSCFKRIDSLRYTSALSFGLALVFLVIAVGISIFKIAIGGIGMPRLFPIITDVASVFELFTVTPVIVTAYLCHFNVNPIANELEDSSQIHGIVRTSLALCASVYLLTSFFGFLLFGEGTLDDVLANFDTDLGIPFGSVLNDAVRFSYAAHLVLVFPVVFYAVRINLDGLLFSSSKPLVLDNFRFASITIALIGVVFLGANFIPSIWDIFQFTGATAAACLSFIFPAAITLRDRYNIATKKDKILSVFMIVLAVLANVVAIYSDAFALIKNSITQRE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2157 466 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g2157 466 Pfam Transmembrane amino acid transporter protein 48 451 IPR013057 -
Ssu8g2157 466 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 462 - -
Ssu8g2157 466 PANTHER AMINO ACID TRANSPORTER 7 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2157 Ssu-Chr8 56572722 56576647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2157 21 460 Amino Acid or Auxin Permease AAAP Family AT5G38820 63.575 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2157 K14207 - gmx:100799425 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2157 8 56572722 56576647 Ssu8g2157 8 56572722 56576647 ECH
Ssu8g2157 8 56572722 56576647 Ssu3g0288 3 5116131 5119611 PCT