Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2154 ATGTCTCATCACCACCATTCCTCCAATCCCTTCGCATCATCCCCCACTCACTCCGATTCCGATGCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCTCTCGCCTCTGCTCCTGCGACGACACGAACGTAAACCCCTTTTCCGGCGTCGTTTGCGACCTTCACCGCACGGAACGGGTATTAGGGCTGGGGTTAGGGTTCGGCGTCGAAATCGAGCCCCAAAACAACAATCGCGACAGGGTTTTCAGTTTCACGGTGGGCGATGGTTCGGGTGGGCTTAGGGTCGTAGGGTTTGGTTCGGATTCGGATTCGAGTAGCGAGGAGGGTGGGATTCGCGACGGTGGCGGGTTCGATGATTTCGATGTTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACTCAGAACGAGGGTTTTGAATGGGAGGAGGTGGAGGAGAGGGCGAGTGAGAGGGAGGATTTTGGTTTGGTGGTTGACGAGGTTGAAATTGAAGGTGGTGACGATGGTGATTCGGTGGCGTCGGGGTTTACCAACGCCGCCGAGGAGGAGGAGGCCGGGGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTTCTGGCGGTTAACAATTCGGAGAGGAACGTGAGTAACGGCGGTGGTGGTGGGGTGGAGCGCGAGGGCAACGATGGTGGTGCTGATTTGTTAACAATTCAGGATGGTTACGTGTATGCCGCGGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAACGAGAGTGCCCTGAAGGGCAGCCCTCCTGCGGCGAAGAGTGTCGTGGAGGGCCTCCCGCTGGTGGAGTTGTCCAAGGAGGAGTTGGAGGGGAAGAGCGTGGCGTGCGCCATCTGCAAGGACGAGATTTTGTTGGAGGAGAAGGTGAGGAGGCTGCCCTGCTCCCATTGTTACCACGGGGACTGCATTTTGCCGTGGCTGGGCATCCGCAACACGTGCCCGGTCTGTCGGTTCGAGCTGCCCACCGATGATCCGGAGTATGAGCAGAGGAAGGTCCACAGGGCCGCTCATGATCTGTTGGAGCTTGCGGCAGCAGGGATGCAGTTTTGA 1092 0.5723 MSHHHHSSNPFASSPTHSDSDADSVSCFVTDLFETRSRLCSCDDTNVNPFSGVVCDLHRTERVLGLGLGFGVEIEPQNNNRDRVFSFTVGDGSGGLRVVGFGSDSDSSSEEGGIRDGGGFDDFDVRLCWDSLCLEDQRTQNEGFEWEEVEERASEREDFGLVVDEVEIEGGDDGDSVASGFTNAAEEEEAGEEALRYLEWEILLAVNNSERNVSNGGGGGVEREGNDGGADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVEGLPLVELSKEELEGKSVACAICKDEILLEEKVRRLPCSHCYHGDCILPWLGIRNTCPVCRFELPTDDPEYEQRKVHRAAHDLLELAAAGMQF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2154 363 SMART ring_2 290 330 IPR001841 -
Ssu8g2154 363 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Ssu8g2154 363 SUPERFAMILY RING/U-box 281 338 - -
Ssu8g2154 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 337 IPR013083 -
Ssu8g2154 363 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 363 - -
Ssu8g2154 363 Pfam Ring finger domain 290 331 IPR001841 -
Ssu8g2154 363 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g2154 363 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 3 363 - -
Ssu8g2154 363 CDD RING-H2_RNF126_like 290 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2154 Ssu-Chr8 56516547 56517638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2154 200 345 C3H Transcription Factor Family AT5G15820 53.425 1.00e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2154 - - gmx:100812037 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2154 8 56516547 56517638 Ssu8g2154 8 56516547 56517638 ECH