Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2153 ATGCAAACCAGGGAAGTCTCAGTCTCAGGGCTCAATTACTTACTCCCTTCAAACCCAAGTCCCTACCCTCCTAACAACTACACCATGATCCAAAACAACATTCCCACATTTCAATACCAAAGATTCTCCAACCAATTACAAGGCTACAACCACAACTACAACAGTCCACATCAGGTTCCTGACTTCAGTCCCCAATCATCATGCATCAGCAGCAACTCCACTTCTGATGAGGCAGATGAGCAACAGCTGAGTCTCATCAACGAGAGGAAGCACAGGAGGATGATATCAAACCGGGAATCCGCACGCAGATCACGCATGAGGAAGCAGAAACACCTTGATGAGCTTTGGTCACAAGTGGTGTGGCTCAGGAATGAGAACCACCAACTCATAGACAAGCTGAACCACGTCTCAGAGAGCCATGACCAAGTGCTCCAAGAGAATGCTCAGCTGAAAGAGGAAGCCTCAGAGCTTCGCCAGGTGATAAGGGACATGCAGATACACAGCCCTTGCCCCTCCTTCACCCCTTTGGAAGATGATGTCCCTTGCAGCTCAGCATACCTCAGATCTGATTCTTCAAACCAATCCAACTCATGTAACATGGACCTGCTTGGCTGA 615 0.4862 MQTREVSVSGLNYLLPSNPSPYPPNNYTMIQNNIPTFQYQRFSNQLQGYNHNYNSPHQVPDFSPQSSCISSNSTSDEADEQQLSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSESHDQVLQENAQLKEEASELRQVIRDMQIHSPCPSFTPLEDDVPCSSAYLRSDSSNQSNSCNMDLLG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2153 204 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
Ssu8g2153 204 Gene3D - 87 143 - -
Ssu8g2153 204 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Ssu8g2153 204 SUPERFAMILY Leucine zipper domain 89 139 IPR046347 GO:0003700|GO:0006355
Ssu8g2153 204 PANTHER BZIP TRANSCRIPTION FACTOR 1 195 - -
Ssu8g2153 204 Coils Coil 133 167 - -
Ssu8g2153 204 MobiDBLite consensus disorder prediction 53 79 - -
Ssu8g2153 204 CDD bZIP_plant_GBF1 90 141 IPR045314 GO:0003700|GO:0006355
Ssu8g2153 204 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 195 IPR044521 -
Ssu8g2153 204 SMART brlzneu 85 149 IPR004827 GO:0003700|GO:0006355
Ssu8g2153 204 Pfam bZIP transcription factor 89 147 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2153 Ssu-Chr8 56483037 56483651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2153 58 180 bZIP Transcription Factor Family AT3G30530 72.222 3.34e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu8g2153 bZIP_1 3.2e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2153 - - aprc:113867865 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2153 8 56483037 56483651 Ssu8g2153 8 56483037 56483651 ECH
Ssu8g2153 8 56483037 56483651 Ssu3g0285 3 5034701 5035213 PCT