Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2151 ATGAGGAAACCTGATATGATgggaaaagataaaatgaacaacaacaacaacaacaacaatattaagAGCAAGCTAAGGAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAGCTCATAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGACTTCAAAGGTGCGGCAAAAGTTGCCGTCTTCGTTGGATTAACTACTTGAGACCGGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCGGCACGTCTCCCTGGTCGCACAGACAACGAGATCAAGAATTTCTGGAATTCCACGCTGAAGAAAAGATTGAAAATCAACAACAACTCCACTTCATCACCAAACAACAGTGACTCATCAGAGCCTAGAGATGTCATGGGTGGGATCATGCCCATGAACGAGCATGACCTCATGACCATGTGCATGGATTCCTCCTCATCAACATCGTCATCATCCATGCATCATGCATGCCAACATGGTTTTAACTGA 564 0.422 MRKPDMMGKDKMNNNNNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKINNNSTSSPNNSDSSEPRDVMGGIMPMNEHDLMTMCMDSSSSTSSSSMHHACQHGFN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2151 187 MobiDBLite consensus disorder prediction 167 187 - -
Ssu8g2151 187 CDD SANT 30 74 IPR001005 -
Ssu8g2151 187 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Ssu8g2151 187 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Ssu8g2151 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Ssu8g2151 187 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Ssu8g2151 187 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Ssu8g2151 187 MobiDBLite consensus disorder prediction 1 23 - -
Ssu8g2151 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Ssu8g2151 187 MobiDBLite consensus disorder prediction 131 147 - -
Ssu8g2151 187 PANTHER TRANSCRIPTION FACTOR MYB83 1 180 - -
Ssu8g2151 187 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Ssu8g2151 187 MobiDBLite consensus disorder prediction 131 155 - -
Ssu8g2151 187 Gene3D - 24 80 - -
Ssu8g2151 187 SMART sant 79 127 IPR001005 -
Ssu8g2151 187 SMART sant 26 76 IPR001005 -
Ssu8g2151 187 CDD SANT 82 125 IPR001005 -
Ssu8g2151 187 Gene3D - 81 151 - -
Ssu8g2151 187 PANTHER MYB DOMAIN PROTEIN 55 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2151 Ssu-Chr8 56465669 56467929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2151 1 130 MYB Transcription Factor Family AT3G08500 82.707 1.77e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2151 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2151 K09422 - gmx:100796379 310.071