Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2144 ATGGGGCCAAATGATGAGTTCAATAAGCAGGGATATGATGAGGAAACTCCTTTGCAAGAGAGGTTAAACAGGCTTACATCATCCATTGGGAAGGCTGGTTTGGCTGTGGCTTTTCTTgtccttgttgttttgttggttAGGTACTTCACAGGGAACACAAAGGATGAGAATGGGATTAGAGAGTTCAATAGAAGCAGGACCAAGTTTGATGATATAATGAATACTGTTGTGGGGATTGTTGCCGATGCCGTtaccattgttgttgttgcaattCCTGAGGGTCTTCCATTGGCTGTGACTCTCACTCTAGCTTATtcaatgaagaaaatgatggcTGACCAAGCAATGGTGAGAAAGCTCTCTGCATGTGAGACAATGGGTTCTGCTACCACAATTTGTACTGACAAGACAGGAACTCTCACACTCAACGAGATGAAGGTGACCAAGTTCTGGCTTGGTCTGGAACCTGTGGCAGAAACTGGAAGTGCCTACTCAAAGGTTGCTCCATTTTTACTTCAACTGATCCAAGAAGGAGTGGCTCTCAACACAACTGGTAGTGTGCACAAGCCTAATAAACCAGGTTCTGAATTTGCTTTTTCAGGTAGTCCCACAGAAAAAGCAATCCTATCTTGGGCAGTCTTGGAATTGAACATGGACATGGAGCACTTGACAAGAAGTTGTTCCATCGTCCATGTTGAGACCTTCAattcaaagaagaaaagaagtggAGTTTTATTGAGAAGGAAGGCAGACAACACAGTTAGTGCACACTGGAAAGGAGCGGCTGAGATGGTACTAAAGATGTGTTCCAGGTACTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGCATGTTGAAGTTTGAACACATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTACTTTTGCACATGTAGAAGTAGCTGAAGAAGAGCTTGGAGATGGAGAAGGCAACACAATGGTGAAAGTGAAAGACAATGGTTTAACCTTGTTAGGACTTGTGGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAATGCTGTGGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCTATAGCAACTGAATGCGGCATACTTTGGCCTACTCAGGACACAGATGGAGCAGTGGTTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGATTGGAGAAGGTGGACAAGATCTGTGTGATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTAAAACAGAAAGGCCATGTAGTTGCTGTCACTGGAGATGGCACAAATGATGCACCAGCACTCAAAGAAGCCGATATTGGACTTTCAATGGGAATGCAAGGTACTGAAGTGGCTAAAGAGAGTTCAGATATTGTTATATTGGATGACAATTTTGCATCTGTAGTTACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAGTTCATTCAGTTTCAATTGACAGTGAATGTGGCAGCACTTGCAATCAACTTTGTGGCAGCAGTGTCAGCTGGGGAAGTGCCACTAACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCCTTGGCTCTTACAACAGAAAAGCCTACCATGGAGTTGATGGACAAACCACCAGTAGGTAGAACAAAACCCCTCATCACTAATGTCATGTGGAGGAATATATTGGCTCAAGCTTTGTACCAAATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTCGGTGTGACATCTGGGGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAAGGGAATGTCTTCAAAGGCATACACAGGAGCAAGTTGTTTTTGGGCATTATTGGCATAACAATAATACTTCAGGTAGTGATGGTTGAGTTTCTCAAGAAATTTGCTGATACTGAGAGGCTAAACTGGGGGCAATGGGCTATTTGCATCGGTCTAGCTACAATTTCCTGGCCAATTGGTTGGGTTGTGAAATTGATACCTGTCCCAGATAAACCATTGCTCAATATTTTGAGTATGAAGAAATGA 2142 0.4118 MGPNDEFNKQGYDEETPLQERLNRLTSSIGKAGLAVAFLVLVVLLVRYFTGNTKDENGIREFNRSRTKFDDIMNTVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGLEPVAETGSAYSKVAPFLLQLIQEGVALNTTGSVHKPNKPGSEFAFSGSPTEKAILSWAVLELNMDMEHLTRSCSIVHVETFNSKKKRSGVLLRRKADNTVSAHWKGAAEMVLKMCSRYYDASGIVKDLDNDSMLKFEHIIQGMAASSLRCITFAHVEVAEEELGDGEGNTMVKVKDNGLTLLGLVGIKDPCRPGVKNAVEACQHAGVNVKMITGDNVFTAKAIATECGILWPTQDTDGAVVEGEEFRNYTPEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGMQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALTTEKPTMELMDKPPVGRTKPLITNVMWRNILAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKGNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWAICIGLATISWPIGWVVKLIPVPDKPLLNILSMKK 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2144 713 Pfam Cation transporting ATPase, C-terminus 528 698 IPR006068 -
Ssu8g2144 713 Gene3D - 344 459 IPR023214 -
Ssu8g2144 713 SFLD p-type atpase 115 496 IPR044492 -
Ssu8g2144 713 Gene3D - 190 343 IPR023299 GO:0000166
Ssu8g2144 713 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 74 155 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2144 713 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 416 524 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2144 713 ProSitePatterns E1-E2 ATPases phosphorylation site. 135 141 IPR018303 -
Ssu8g2144 713 PANTHER CALCIUM-TRANSPORTING ATPASE 12 686 - -
Ssu8g2144 713 Pfam haloacid dehalogenase-like hydrolase 130 457 - -
Ssu8g2144 713 SUPERFAMILY HAD-like 131 548 IPR036412 -
Ssu8g2144 713 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 140 341 IPR023299 GO:0000166
Ssu8g2144 713 PRINTS H+-transporting ATPase (proton pump) signature 290 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2144 713 PRINTS H+-transporting ATPase (proton pump) signature 475 500 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2144 713 PRINTS H+-transporting ATPase (proton pump) signature 443 459 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2144 713 SFLD Haloacid Dehalogenase 115 496 - -
Ssu8g2144 713 PRINTS P-type cation-transporting ATPase superfamily signature 359 369 - -
Ssu8g2144 713 PRINTS P-type cation-transporting ATPase superfamily signature 337 348 - -
Ssu8g2144 713 PRINTS P-type cation-transporting ATPase superfamily signature 133 147 - -
Ssu8g2144 713 PRINTS P-type cation-transporting ATPase superfamily signature 443 462 - -
Ssu8g2144 713 PRINTS P-type cation-transporting ATPase superfamily signature 467 479 - -
Ssu8g2144 713 Gene3D - 6 160 - -
Ssu8g2144 713 Pfam E1-E2 ATPase 13 111 - -
Ssu8g2144 713 Gene3D - 460 701 - -
Ssu8g2144 713 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 700 IPR023298 -
Ssu8g2144 713 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 13 700 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu8g2144 713 PANTHER CATION TRANSPORTING ATPASE 12 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2144 Ssu-Chr8 56430847 56432988 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2144 13 713 Primary Pumps ATPases AT3G22910 71.307 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2144 K01537 - gmx:100793918 1245.72