Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2143 ATGTCAATGACCTTGCTCACAAACTTGAAGCGCATTGAGGTTCTACCCAATGCGCCAAACACTGTTAGTGCACCCAATAAAAGATGGCACTCGGCATTTGTGGCCATCTATTGTTCCCGAGCCATTATGTCACACTTCACTCGCAACAGCACAAACAAGACCAAAGCAAAAGCCTCGCCTACACCAACACCATCTTTCACCGTGGTTGATTTCAACTCACACCATTCCTTTGGTATTGAGCAAACAACCCTCACCGATATTGTCAAAGAAAAAGACCTTCGGAACCTTGATAAATTTGGTGGGGTTGAAGGGGTGGCAACAGCCCTAGAAACTCACCTTGAGTATGGTATCAAAGGTGATGATGCTGCTGCTGAAGACATCACACGTAGAAAAGAAGTGTTTGGTTCCAACACTTCCAACAAACCACCTTCAAAAGGGTTCTTCCACTTCGTGGTGGAAGCCTTTAAGGATGTCACTATTCTAATTCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAGCATGGCCTCAAAGAAGGTTGGTACGATGGTGGAAGCATTTTTGTTGCGGTGTTCATTGTCATTTCCTTGGCTTCAATAAGCAACTTCAGACAGAGCAGACAGTTTGACAAGTTGTCTCAAGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGCCAACATGTGTCAATCTTTGAAATCGTGGTTGGTGATGTCATTTGCTTGAAGATTGGAGATCGAGTGCCAGCAGATGGGTTATTCATAGAAGGGCATTCACTAAAAGTGGATGAATCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGACAGCACCACCCTTTTTTGTTCTCTGGCACCAAGGTGGCTGATGGGTATGCCTAA 906 0.4492 MSMTLLTNLKRIEVLPNAPNTVSAPNKRWHSAFVAIYCSRAIMSHFTRNSTNKTKAKASPTPTPSFTVVDFNSHHSFGIEQTTLTDIVKEKDLRNLDKFGGVEGVATALETHLEYGIKGDDAAAEDITRRKEVFGSNTSNKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGLKEGWYDGGSIFVAVFIVISLASISNFRQSRQFDKLSQVSNDIQIDVVRSGRRQHVSIFEIVVGDVICLKIGDRVPADGLFIEGHSLKVDESSMTGESDHVEISRQHHPFLFSGTKVADGYA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2143 301 PANTHER CALCIUM-TRANSPORTING ATPASE 11 301 - -
Ssu8g2143 301 Gene3D - 153 208 - -
Ssu8g2143 301 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 229 IPR023298 -
Ssu8g2143 301 PANTHER CATION TRANSPORTING ATPASE 11 301 - -
Ssu8g2143 301 Pfam Cation transporter/ATPase, N-terminus 100 170 IPR004014 -
Ssu8g2143 301 Pfam E1-E2 ATPase 223 300 - -
Ssu8g2143 301 SMART Cation_ATPase_N_a_2 98 175 IPR004014 -
Ssu8g2143 301 Gene3D - 125 300 - -
Ssu8g2143 301 SUPERFAMILY Calcium ATPase, transduction domain A 223 300 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2143 Ssu-Chr8 56429908 56430813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2143 12 301 Primary Pumps ATPases AT3G22910 55.517 4.94e-102 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2143 K01537 - gmx:100793918 503.056