Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2142 ATGCTTGTTACCTCAGTTGGTATAAGCACAACATGGGGCCAAATGATGAGTTCAATAAGCAGGGATATTGATGAGGAAACTCCTTTGCAAGAGAGGCTAAACAGGCTTACATCATCCATTGGGAAGGTTGGTTTGGCTGTGGCTTTTCTTgtccttgttgttttgttggtCAGGTACTTCACAGGGAACACAAAGGATGAGAATGGGATTAGAGAGTTCAATGGAAGCAGGACCAAGTTTGATGATATAATGAATGCTGTTGTGGGGATTGTTGCCGATGCCGTtaccattgttgttgttgcaatCCCCGAGGGTCTTCCATTGGCCGTGACTCTCACTCTGGCTTATtcaatgaagaaaatgatggcTGACCAAGCAATGGTGAGAAAGCTCTCTGCATGTGAGACAATGGGTTCTGCTACCACAATTTGTACTGATAAGACAGGAACTCTCACACTCAACGAGATGAAGGTGACCAAGTTCTGGCTTGGCCTAGAACCTGTGGCAGAAACTGGAAGTGCCTACTCTAAGGTTGCTCCATTTGTTCTTCAACTAATCCAAGAAGGAGTGGCTCTCAACACAACTGGTAGTGTGCACAAGCCTAATAAACCAGGTTCTGAATTTGAGTTTGCAGGTAGTCCCACCGAAAAAACAATCCTATCTTGGGCAGTCTTGGAATTGAATATGGACATGGAGCACTTGACAAGAAGTTGTTCCGTCGTTCATGTTGAGACCTTCAattcaaagaagaaaagaagtggAGTTTTGCTGAGAAGGAAGGCAGACAACACAGTTAGTGCACACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGTTCCAGATATTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGCATGTTGAAGCTTGAACACATTATTGAAGGGATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTAGCTGAAGAAGAGCTTGGAGATGGAGAAGGCAACACAATGGTGAAAGTGAAAGACAATGGTTTAACCTTGTTAGGACTTGTGGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAAGCTGTGGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCTATAGCAACCGAATGCGGCATACTTCGGCCTAATCAGGACACAGATGGAGCAGTGGTTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGTTGGAGAAGGTGGACAAGATCTGTGTGATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGCCTAAAACAGAAAGGCCATGTAGTTGCTGTCACTGGAGATGGCACAAATGATGCACCAGCACTCAAAGAAGCCGATATTGGACTTTCAATGGGAATTCAAGGTACTGAAGTGGCCAAAGAGAGTTCAGATATTGTTATATTGGATGACAATTTTGCATCTGTAGTCACTGTCTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAGTTCATTCAGTTTCAATTGACAGTGAATGTGGCAGCACTTGCAATCAACTTTGTGGCAGCAGTGTCAGCTGGGGAAGTGCCACTAACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCCTTGGCTCTTGCAACAGAAAAGCCTACCATGGAGTTGATGGACAAACTACCAGTAGGTAGAACAAAACCCCTCATCACTAATGTCATGTGGAGGAATATATTGGCTCAAGCTTTGTACCAAATAGTAGTTTTGCTGACTCTTCAATTCAGAGGTGAGTCTATCTTCAGTGTGACATCTGGGGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTCAATGAATTCAATGCAAGGAAGATGGAGAAAAGAAATGTCTTCAAAGGCATACACAGGAGCAAGTTGTTTTTGGGCATTATTGGCACAACAATAATACTTCAGGTGGTGATGGTTGAGTTTCTCAAGAAATTTGCTGATACAGAGAGGCTAAATTGGGGGCAATGGGCTATTTGCATCGGTCTAGCTGCAATTTCCTGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGATAAACCATTGCTCAATTTTTTGAGTACGAAGAAATGA 2175 0.417 MLVTSVGISTTWGQMMSSISRDIDEETPLQERLNRLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDENGIREFNGSRTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGLEPVAETGSAYSKVAPFVLQLIQEGVALNTTGSVHKPNKPGSEFEFAGSPTEKTILSWAVLELNMDMEHLTRSCSVVHVETFNSKKKRSGVLLRRKADNTVSAHWKGAAEMVLKMCSRYYDASGIVKDLDNDSMLKLEHIIEGMAASSLRCIAFAHVEVAEEELGDGEGNTMVKVKDNGLTLLGLVGIKDPCRPGVKKAVEACQHAGVNVKMITGDNVFTAKAIATECGILRPNQDTDGAVVEGEEFRNYTPEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMDKLPVGRTKPLITNVMWRNILAQALYQIVVLLTLQFRGESIFSVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGTTIILQVVMVEFLKKFADTERLNWGQWAICIGLAAISWPIGWVVKLIPVPDKPLLNFLSTKK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2142 724 SFLD p-type atpase 126 507 IPR044492 -
Ssu8g2142 724 PRINTS P-type cation-transporting ATPase superfamily signature 370 380 - -
Ssu8g2142 724 PRINTS P-type cation-transporting ATPase superfamily signature 454 473 - -
Ssu8g2142 724 PRINTS P-type cation-transporting ATPase superfamily signature 144 158 - -
Ssu8g2142 724 PRINTS P-type cation-transporting ATPase superfamily signature 478 490 - -
Ssu8g2142 724 PRINTS P-type cation-transporting ATPase superfamily signature 348 359 - -
Ssu8g2142 724 Gene3D - 1 167 - -
Ssu8g2142 724 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 711 IPR023298 -
Ssu8g2142 724 Pfam haloacid dehalogenase-like hydrolase 141 468 - -
Ssu8g2142 724 Pfam E1-E2 ATPase 2 122 - -
Ssu8g2142 724 SUPERFAMILY HAD-like 142 559 IPR036412 -
Ssu8g2142 724 Pfam Cation transporting ATPase, C-terminus 539 709 IPR006068 -
Ssu8g2142 724 ProSitePatterns E1-E2 ATPases phosphorylation site. 146 152 IPR018303 -
Ssu8g2142 724 PRINTS H+-transporting ATPase (proton pump) signature 454 470 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2142 724 PRINTS H+-transporting ATPase (proton pump) signature 301 319 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2142 724 PRINTS H+-transporting ATPase (proton pump) signature 486 511 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2142 724 PANTHER CATION TRANSPORTING ATPASE 1 698 - -
Ssu8g2142 724 Gene3D - 471 712 - -
Ssu8g2142 724 Gene3D - 354 470 IPR023214 -
Ssu8g2142 724 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 151 352 IPR023299 GO:0000166
Ssu8g2142 724 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 1 711 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu8g2142 724 Gene3D - 202 353 IPR023299 GO:0000166
Ssu8g2142 724 PANTHER CALCIUM-TRANSPORTING ATPASE 1 698 - -
Ssu8g2142 724 SFLD Haloacid Dehalogenase 126 507 - -
Ssu8g2142 724 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 87 166 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g2142 724 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 427 535 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2142 Ssu-Chr8 56397636 56399810 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2142 1 724 Primary Pumps ATPases AT3G22910 72.490 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2142 K01537 - gmx:100793918 1285.78