Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2141 ATGTCAATGAGCTTGCTCACAAACTTGAAACGCATTGAGGTACTACTCAATGCACCAAACACCGTTAGTGCACCCACTAAAAGATGGCACTCTGCATTCGTGGCCATCTATTGTTCCCGAGCCATTATGTCACATTTCACTCCCAACAACACAAACAAGACCAAAGCAAAAGTATCACCTACACCAACACCATCTTTCACCGTGGTTGATTTGTACTCACACCATTCCTTTGATATAGACCAGACAACCCTCACCGATATTGTCAAAGAAAAAGACCTTCAGAACCTTGATAAATTTGGTGGGGTTGAAGGGGTGGCTTCGGCCCTTGAAACCCACGTTGAGTATGGTATCAAAGGTGATGATGCTGATGCTGAAGACATCACACGTAGAAAAGAAGTGTTTGGTTCCAACACTTACAACAAACCACCTTCCAAAGGGTTCTTCCACTTCGTGGTGGAAGCCTTTAAGGATGTCACAATTCTAATTCTTTTGGCCTGTGCTGCTTTTTCTCTTGGCTTTGGCATCAAGGAGCATGGCCTCAAGGAAGGTTGGTACGATGGTGGAAGCATCTTTGTTGCTGTGTTCATTGTTATTTCCATGTCTTCAATAAGCAACTTCAGACAGAGCAGACAGTTTGACAAGTTGTCTCAAGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGCCAACATGTGTCAATCTTTGAAATCGTGGTTGGTGATGTCATTTGCTTGAAGATTGGAGATCAAGTGCCAGCAGATGGGTTATTCATAGAAGGACATTCACTTAAAGTTGATGAATCAAGCATGACAGGAGAAAGTGATCAATGTTGA 843 0.4318 MSMSLLTNLKRIEVLLNAPNTVSAPTKRWHSAFVAIYCSRAIMSHFTPNNTNKTKAKVSPTPTPSFTVVDLYSHHSFDIDQTTLTDIVKEKDLQNLDKFGGVEGVASALETHVEYGIKGDDADAEDITRRKEVFGSNTYNKPPSKGFFHFVVEAFKDVTILILLACAAFSLGFGIKEHGLKEGWYDGGSIFVAVFIVISMSSISNFRQSRQFDKLSQVSNDIQIDVVRSGRRQHVSIFEIVVGDVICLKIGDQVPADGLFIEGHSLKVDESSMTGESDQC 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2141 280 Pfam Cation transporter/ATPase, N-terminus 100 170 IPR004014 -
Ssu8g2141 280 SUPERFAMILY Calcium ATPase, transduction domain A 223 278 IPR008250 -
Ssu8g2141 280 Pfam E1-E2 ATPase 223 278 - -
Ssu8g2141 280 SMART Cation_ATPase_N_a_2 98 175 IPR004014 -
Ssu8g2141 280 Gene3D - 125 279 - -
Ssu8g2141 280 Gene3D - 153 208 - -
Ssu8g2141 280 PANTHER CALCIUM-TRANSPORTING ATPASE 11 279 - -
Ssu8g2141 280 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 229 IPR023298 -
Ssu8g2141 280 PANTHER CATION TRANSPORTING ATPASE 11 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2141 Ssu-Chr8 56396729 56397571 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2141 12 278 Primary Pumps ATPases AT3G22910 58.672 2.66e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2141 K01537 - gmx:100793918 478.789