Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2139 ATGTTGAAGGAAGGCACCAACAAGGTTGTTGGTGGCAGCACCGGCACCTGGGCACGTGTCTGCGACACGTGCCGGTCAGCGCCATGCATGGTCTACTGCCACGCCGACTCAGCATACCTGTGTTCCTCCTGCGACGCTCGCGTCCACGCAGCCAACCGCGTGGCCTCGAGACACAAGCGTGTGCGGGTGTGCGAAGCGTGCGAGCGCGCCCCCGCGGCGTTTCTATGCAAAGCCGACGCGGCCTCTCTCTGCTCTTCCTGCGACGCCGACATTCACTCCGCCAACCCCCTCGCCGGCCGCCACCACCGCGTGCCCATCCTCCCGATCTCGGGGTCCCTCTTAGGGGGACAGGAAAACGACAACGATCACGGTTTCACGAATGAagtggaagaggaagaggaagaggtcGTGGACAGGTGTGAAGATGAGGTTGAAGCTGCTTCGTGGCTGTTGCCGCATCCTGTGAAGAGCAACGAAGAGGAAGAGAACGGCGGTGATGAGGGCTTTTTGTTTGGTGATGAGTATTTGGACCTTGTGGATTGTAACTCGGGTGGTCATCAAAACCAGTTTGGCAATAACGTTtatcagcagcagcagcagaATTACAACACTGTCCCTCAGAACTACGCAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAATCGGGTTTGGAGTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTgttTCGGTTTCATCAATGGATGTTGGCGTTGTACCAGAATCAACAATGAGTGACATCTCAATGTCCCACTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCACTGGACAGAGAGGCCAGAGTACTAAGATACagggagaaaaagaagacaagaaagtttgaaaagaaaataaggtatGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGATTTGCAAAGAGAACTGATATAGAAGCTGAAGTGGACCAGATGCTCTGCACAACACTGTTCACTGAAGTTGGAGGTAGCATTTTCCCCTCTTTCTGA 1080 0.4935 MLKEGTNKVVGGSTGTWARVCDTCRSAPCMVYCHADSAYLCSSCDARVHAANRVASRHKRVRVCEACERAPAAFLCKADAASLCSSCDADIHSANPLAGRHHRVPILPISGSLLGGQENDNDHGFTNEVEEEEEEVVDRCEDEVEAASWLLPHPVKSNEEEENGGDEGFLFGDEYLDLVDCNSGGHQNQFGNNVYQQQQQNYNTVPQNYAVVPVQVPQHFQSGLEFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTMSDISMSHSKSPIGTSDLFPPLPMPSHLTPLDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDIEAEVDQMLCTTLFTEVGGSIFPSF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2139 359 CDD Bbox1_BBX-like 20 63 - -
Ssu8g2139 359 CDD Bbox1_BBX-like 63 106 - -
Ssu8g2139 359 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
Ssu8g2139 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 14 359 - -
Ssu8g2139 359 SMART bboxneu5 16 63 IPR000315 GO:0008270
Ssu8g2139 359 SMART bboxneu5 64 106 IPR000315 GO:0008270
Ssu8g2139 359 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Ssu8g2139 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 359 IPR045281 GO:0009909
Ssu8g2139 359 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Ssu8g2139 359 Pfam CCT motif 290 332 IPR010402 GO:0005515
Ssu8g2139 359 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2139 Ssu-Chr8 56238810 56241084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2139 1 359 C2C2-CO-like Transcription Factor Family AT3G02380 54.907 7.98e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu8g2139 zf-B_box 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2139 - - gmx:100782635 549.28