Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2138 ATGTCCTACCAGACCCGTCTGACTAAAATCCCTCGAAGCAGAACCAACCACAAGATAATGCTAACACTTGAACACACCACTATCTTCGCGCCACGTGTCCACCTCGGATTGTCCCCCACCACCCACGTTACTTACAAGCACCGCCAACCCCACCTCCCACGTGCCTGCGACACGTGCGGCTCCGCCGCGAGCACCGTCTACTGCCTCGCCGACTCCGCGTTCCTGTGCCCGAGCTGTGAACAGAGTCACGCGTTTGACGATGGCGACGTGGCAGAAGCGGCTTCGTGGTTGGTGTTGAACCCTGAGAAGAACGACGGTGATGGGTTACTGTTTGGCGGGGAGGTTGATGAGGGTTTGGAGCCTGTGGAGGATTGTAACTCGTGTGGTGAGAATCAGTTGTGCGATGATTGCAGTGTGCCTCACAAAAGCTGTGAAGTGGATAGTGTGGGTTCGGTTCAGAATGATCAGATGGAACACCGGCAGCTACAGCGTTTTCAACCGGGCGTGGAGTTTGACTCCTCAAAACCTGCGTATGGTTCCGTGAATCAAAGTGTCTCAATTTCATCAACGGAGGTTAACCGTGTACCAGAATCAACAATCAGCGATCAACtctcaatttctcattcaaaccCCCCAATAATGGACACGTTAGACCTATCTTCTGGACCTCCTATTTTGATGCCATCCTATCTTACTTACAGAGAGACCAGAGTTCTaagatataaagagaaaaagaagacaagaaagtttgaaaagaaaatcagATATACCTCGAGAAAAGCCTATGCGGAGATAAGACCCCGTATAAAAGGTCGATTTGCAAAGAGAAATAATGTAGAAGCTGAAACGGACCACATGTTCTCCTCGACTCTAATTCAGAAGCAGGATATAGCGTTGTTCCGTCTTTCTGAATGTCCAGTTATAGATATTGCCAGAAGACAAAAACCTACGTTCAGAATGGATTTGTGTCCTCTCATGAAGTAA 984 0.4634 MSYQTRLTKIPRSRTNHKIMLTLEHTTIFAPRVHLGLSPTTHVTYKHRQPHLPRACDTCGSAASTVYCLADSAFLCPSCEQSHAFDDGDVAEAASWLVLNPEKNDGDGLLFGGEVDEGLEPVEDCNSCGENQLCDDCSVPHKSCEVDSVGSVQNDQMEHRQLQRFQPGVEFDSSKPAYGSVNQSVSISSTEVNRVPESTISDQLSISHSNPPIMDTLDLSSGPPILMPSYLTYRETRVLRYKEKKKTRKFEKKIRYTSRKAYAEIRPRIKGRFAKRNNVEAETDHMFSSTLIQKQDIALFRLSECPVIDIARRQKPTFRMDLCPLMK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2138 327 ProSiteProfiles CCT domain profile. 234 276 IPR010402 GO:0005515
Ssu8g2138 327 ProSiteProfiles Zinc finger B-box type profile. 56 93 IPR000315 GO:0008270
Ssu8g2138 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 88 295 - -
Ssu8g2138 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 53 82 - -
Ssu8g2138 327 Pfam CCT motif 234 276 IPR010402 GO:0005515
Ssu8g2138 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 88 295 IPR045281 GO:0009909
Ssu8g2138 327 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 53 82 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2138 Ssu-Chr8 56192644 56195988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2138 54 80 C2C2-CO-like Transcription Factor Family AT3G02380 74.074 1.71e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g2138 CCT 1.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2138 - - gmx:100301886 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2138 8 56192644 56195988 Ssu8g2138 8 56192644 56195988 ECH
Ssu8g2138 8 56192644 56195988 Ssu3g0276 3 4904685 4906873 PCT