Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2137 atgCGTACGAAACTAGGCACCACCAACCCCACCTCCCCACGTGCCTGCGACACGTGCCGCTCCGCCGCAAGCACCGTCTACTGCCTCGCCAACTCCGCGTTCCTGTGCCCGATCTGTGAACCGAGTCACGCTTTTGACGATGGCGGCGTGGCAGAAGCGGCTTCGTGGTTGGTGTTGAACCCTGAAAAGAATGACGGTGATGATGGGTTATTGTTTGGCGGGGAGGTTGATGTGGGTTTGGAACCTGTGGAGGGTTGTAACTCGTGTGGTGAGAATCAGTTGTGTGATGATTGCAGTGTGCCCCAAAAAAGCTATGAAGTGGATAGTGTGGTTTCGGTTCAGAAACAGAGGCAGCACCAGCAGGTACAGCGTTTTCAACCTGGTGTGGAGTTTGACTCCGCAAAACCTGCGTATGGACTTGGTACTGTGAGTCAAAGGGTCGCAATTTCATCAACGGAGGTTAACCGTGTACCAGAATCAACAATCAGCGATCAACtctcaatttctcattcaaaccCCCCAATAATGGGCACGTTAGACCTATCTTCTGGACCTCCTATTTTGATGCCATCCTATCTTACTTACAGAGAGGCCAGAGTTCTaagatataaagagaaaaagaagacaagaaagtttgaaaagaaaatcagATATGCCTCGAGAAAGGCCGATGCAGAGATAAGACCCCGTATAAAAGGTCGATTTGCAAAGAGAAATAATGTAGAAGCTGAAACGGACCACATGTTCTGCTCGACTCTAATTACAGAAGCAGGATATAGCGTTGTTCCGTCTTTCTGA 798 0.4599 MRTKLGTTNPTSPRACDTCRSAASTVYCLANSAFLCPICEPSHAFDDGGVAEAASWLVLNPEKNDGDDGLLFGGEVDVGLEPVEGCNSCGENQLCDDCSVPQKSYEVDSVVSVQKQRQHQQVQRFQPGVEFDSAKPAYGLGTVSQRVAISSTEVNRVPESTISDQLSISHSNPPIMGTLDLSSGPPILMPSYLTYREARVLRYKEKKKTRKFEKKIRYASRKADAEIRPRIKGRFAKRNNVEAETDHMFCSTLITEAGYSVVPSF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2137 265 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 13 41 - -
Ssu8g2137 265 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 51 265 - -
Ssu8g2137 265 ProSiteProfiles CCT domain profile. 196 238 IPR010402 GO:0005515
Ssu8g2137 265 ProSiteProfiles Zinc finger B-box type profile. 11 43 IPR000315 GO:0008270
Ssu8g2137 265 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 41 IPR045281 GO:0009909
Ssu8g2137 265 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 51 265 IPR045281 GO:0009909
Ssu8g2137 265 Pfam CCT motif 196 238 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2137 Ssu-Chr8 56155225 56158284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2137 11 40 C2C2-CO-like Transcription Factor Family AT3G02380 70.000 4.31e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu8g2137 CCT 1.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2137 - - gmx:100301886 212.231