Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2124 ATGGAGTGTCTTATCTCGGTAGCAACAGGAATTGTGACAAAAGTTGGGgagtcattagtagcaccaattGCAAATCAGTTTGGATATCTAGTTtactacaacaaaaatataaaaaatcttaaaaatgaaCTCAAAACGTTGGAAGGTAGGAAACAAGGAGTACAAGGGATGGTGGACGAAGATAAAAGGAATGGACGTCAAATTGTATCTGTTGTGGAAGATTGGCTCTACAAAGTGGAAAATATCAAAAATGAAGTACAAGAATTCAATGATTTTCAAGTGAAAAATAGTAAGTGCCATGGTAAATGGTCTCCATATTTGGTGCTACGCTATTCGTTAAGCAAGAGAGCCAAAAGATTGACCGTGGATGTTACAAGcttaaatgaagagaaatttgAGATAATATCCTACTTTGCTCCTCCACCAAGACTTGGATCCATCTTCTCAAGTGTTATTAAAAGTTTCCCAAGTAGAAAATCAATTGTGATAGAGGTcatagagaaattaaaagatgaaGATTTCAAAAGAGTAGGCATATGTGGGATGGGTGGAGTGGGAAAGACCACATTTGTGAAAGAAATAATCCAAATTCCAGATGTAGGCAAGTTATTTGATGAAGTTGTAATGGCAGTGGTATCCCAAAATGTTGACTATAGGAAGATTCAAGGTCAAATTGCTGATGCTTTAGGCTTGAAATTTGATAAGGAGACTATTCAAGGAAGAGCATGTCAACTacatgatagattgaaaaatatcaataatgtCCTAATAGTGCTTGATGATGTTTGGACAGACCTTGATTTTGAGTCTATAGGGATTCCTTCCAATGAGCATCACAAGAATTGCAAAATTTTGTTCACTTCAAGGATTGAAGATGTGTGCTATAAGATGAGAAGTCAAAAGAATTTCATAATCTCTATCTTGTCTCCAAATGAAAGCTGGGATCTTTTTAATGAGATGGCGGGTAGTAATCTTTCAATCAAGCCTGATATTCATCACATAGCCAAAGAGGTTGCAAATGAATGTGGGGGGTTGCCAATTGCCATTGTAACAATGGCAAAAGCATTAGCAAATAAAGAAAAGCATACATGGGAGGATGCATTGGATCAATTAAAAAAGTCTTCCAAGACCTCCCTTTCAGAAATGCAAGCATGTGTATATTCAAGTATCAAGTTGAGTTACAACTTTTTAGACAGTGAGGAAgacaaaattttccttttcctttgtgGCTTATTTCCAGAAGACTTTGACATTCCTATAGAAGTTCTACTCAGGCATGGAATGGGTTTGGGATTGTTTAAAGACATTGACGCATTGTGGAAAGCTAGAAATCGTGTGCATACCATCATTGATAGACTAAAAAGACGCTTCATGTTGCTTGATAGTAATGTGGAAGAATGTGTCAAAATGCATGATGTTGTACGTGATGTTGTCATATCAATTGCATCTGAAGAAGAATATGGTTTAATGGTACAATGTGATGCATCTCAAATGGAGCAGCCTAAAGAAGAAACATGGTGCAATAGCACTGCGGTCTCACTTATGTTTGAGGAAACAAAGGAGCTTCCCGAAGTGTTAGACTGTCCAAAGCTTAAGCTTTTACAAGTAGCatcaaagaaaaaggaattagTTCAAGAAAATTTCTTCCAAGGTGTGAATAAGCTCATGGTGTTAAGTCTACAAAATATGCACATTCATTCAATGTCATCTGTATTCAAAGCTTTGGACAACATCCACACTCTACGATTAGAAGATTGTCAAGTTAGAGACATATCTGTAATTGGTAAACAACTCAAAAAACTAGAGATTCTTAGCTTTGCTAACTCAAATATCAAACAATTGCCAGAAGAAATTGGACAACTAAGCTTGCTAAGATTATTGGATCTAACTGAATGTAATTATCTCATTCAAATATCTGCTAATGTCTTAGCAAGATTGTCTAGACTGGAAGAACTCTATCTTAGAGTGAGGAATCTCCCTTCAAAGGAGACTAATCACATTCTTTTTGAGTTACAATCTTTATCTCATCATCTGAAGGTCGTAGAGATTGCAGTTTTGGCAAATGAAGATTTGCCCAAAGATTTGGTCTTCAAAAATATAGTGAGGTTTTGGGTCTATGTGAGAGATTCATTTACTCTTTTTCATGGCATTGTTCGTAAGGGATACTTACACCCAAATATTTTGAGACTAAATAATGCATATTACAACTATATCAAGAAGAGTGTGACAATTCAACCGTTGCTTCAAAAAGTAGAAATGCTCAACTTGGTTGATATCAAGAACTTGAAAAATGTCATCTTGGAATTAAGTGAAAGGGGTTTTCCAATTTTGAAACATCTAAGCATTGAGTACTGCAACACTCTAGAATATGTTGTAGATGCATGTGATGGTTGTATCTTTCCACAACTCCAATCATTTTCTCTACGTAATTTGGATAATTTGAAAGAGATAGTTAATGTGGCTAGTCACATGAGTCAAACAATTGACTTTGCAAAGGTCGACACCATCACTTCATGTCAATGCTTTGGAAGCCTTACAAAtcttaaaatagaatattgtaACAAGTTGAAGACTGTCTTCACATTGTTTCCGAGGACAATTATTTTGGCTACACTTCAACGCTTGCATGTAGCTGAAAGCTATGGAATTGAATACATTATCTCAAGCAAAACTAAGTATGACGAAAACTCAATGATCGAGTTTTCAAATTTAGTAGAACTGAGGTTGCAAGAATTGCCAAACCTGATCGGGTTCGCTAAAACCAATGTTATGCATGAGCGTCATTCCACAATGGTCCAAATTCATGACTCAAGTGTTGATGAATTTATGCCTATTAGTACTCTATTCAAATCTAACTGGATGCAATTGTTCCCAAAGTTGGAAAAACTCTTCTTACATGCATGCTCGTTGTTAGAGATGGTATTTGATATGCAAGAATCAAAATTTCATGGTGAATCACTGGCTTTCTTATTTGCTCAGCTAAAAGAAATAGAGATATCTTGGCTTAGTAAGTTAAGACACATTTGGGGTAATGTTCCAAGCTACATTCAAggctttcaaaatttgaaatcaatcaaAGTTAAGAAATGTGATTGTTTAAGGCATGTCCTCACTCCCAACATTGCAAGAGCACTTACTCAGCTTCAAAAAATGGTGATACACAGCTGCCACTCCATGGAGCAAATTGTTGGAAAGGAAGTAAACctagatgatgatgatgatgaagaagaagaagaacagaaTGTGGAAGCCCCTGTATTTGGTCAATTACAATCTTTAACACTTTTTGATCTCCCGAGCCTTGTGAGTATTTGTTCAGATTCTTATGAAACAGTGTGGCCATCTTTGACAATTTTTCGTATTGAAGGATGCCCTCGGCTTAAGACATTTGCCACGTGTACTTCAATGGTTGCAAGGCAAGAGAATTTCAATGCCTCATCAAGTTATTCAACAACATGTGATGTTGCAAATAGTACTTCTAAAAAGGATTCTCCAAGGTTTCTTCAGTGTTGCCTTGGATGCACCCCACATGCATTTTCCAACTTCAAGGCCAAGGCTTCATCAACAGAGAAAGGTGTTCGTTCTGTCGGCaatatatataccaaagaagAAATAGGATCCCCCGTGCCCATTTTGGAACAAACGCAAGTAAAAGGATGGGATTCACTAGAAGTCTTATTCTTGCTTGAGCAAAACCAGCATTCTGATGCCAGTATCAACTGTCTTGTGAAGTTGATAATTGCACAAGTACCTACAAGTCCTGTAGAAGTCACTGCTTTCAACAACCTCACTCTGTTAAGTTTAGATGCTTGTCATAAGTTGAGATACCTGTTCCCATATTCCATAGCAAAGCTCCTTGTGAAAttgcaagaaataaaaatgtcaaactGTAAGGTGGTAAAGCAACTAGTCCAGGGAGAAGGAGAAGATAGTTCAACTTTATCTCTTCCTCAATCAAATTCTCCCACGGAACATGAGAATTCCTCATCTAGTGACCATGCCACCTTTTCCCAAGAGGCACGTGCCTTAGAGTGGCCATCTTTGAAGAGAATTAGCATTACTCACTGTGGGGTGCTAGAAGTTGTTATTGGTAAAGAAGGGAAGAAAATTGATACCATTGCTTCATTTGCTCAACTACAATCTCTTACATTGAGCCATCTACCAAATGTTGTAAGCTTTTGCTTCACACCTTGTGCATCAGAACCACCATCCTTTGAGAATTGCCATGGGATTAGCTATGAAAACCATGAGGGAACAAGTATTGAAGAAAGAAGAATTATGAGACTTGATCCACTTATAAATGGCTTCATTTTTCCCAATCTAACATATCTAGCAATAACGGGCTGCAACAAAATTAGTTGTTTGTTCTCTCCTTCAACATCAACAAGCTTTGTGCGTTTGATAGAGCTAGATATATGTGGCTGTAGGGACATAAAGGAAATAGTATCTACAGAAGAAACACAAAGGAATGTGATTAAGGTCGTGTTTCGCAGCTTGCAGTGTCTAAAACTTGAAAACCTGTCAAAACTCAGGGCCTTCTGCCAAGGTTCCTATGACTTTGATTTTCCATCATTGCATGAAGTATTCGTGAAAAATTGCCACGTGATGGAGACATTCTCTCATGGGCCTTCATACACGCCGAAGTTGGATAGAGTCACCATGGAAATTGGAAATATCACCAAGAACATATGGATGGGAGATCTGAATGCTACTGTACCACTATGCAAAGCACTTGTCTGTAACATTCTCAATCCCTATCCATTTGTGTGTTTGGCTTTTCAAACATCAGAGACACTTGAATGGATCAAGCAGGATCAATGCACATTAAGATACTTCACCGAAGAAAAACACATGACTGTTGAAGGTTTTCAAAGGCTGCTAAATCTTGTTCCCTCCAATTGTATGtacatatttcaaaatctaaaggaactcacaataaaaaattgtggttcATTGGTTGAGGTGTTTGAATCACGTGGAGTGGATGTAAAGAAAGTGCAAGCCATGATACACTACAAGCTAGAATCAATGAATTTGTATTCTCTACCAAAATTGATCCACGTATGGAAAAACCATGGTGGAATTCTGGGATTCCAGAAGCTAAGAATACTAAGAGTTGAACACTGTGGCAATTTGTGTAGTTTGTTCTCTCCAACAATAGCCAGAAGCCTAGTGCAACTTTGGCACCTACGAGTGCATAGTTGCCACATAATGGAGGAAATAACTACTAAGGAAGATGAGGAAACAGAAGGATCAAATAATGCTACGATTGTTTTTCCACTTTTGAACAAGCTAGAGCTTCGTTATGTCCCCAACCTCAAATGTTTCTGCTCAGGAACTTTCAATATCGATCTCCCATCATGTGAAGAAATGATAATTGAAAAATGTCCCAAGATGACAACCTTTTGCTACGGATCTGTAACCACAGCAAAGCTTCTCCATATATATAAAGGTTCATATGAGTATGTTGACATAATAGGAGACCTTAATATGACCATCTATCATGCTAATGAGAGCTTGAAGGTTGCACTACAAACATCAGAGACAATCACATGCATTGAGCATGATCAACACCTGCTTCCTTACTTAAGAAGTGATACAGAACTGGTTATTGAAGGTAATGAAAAATTGTTGAATTGTATTCCATCCAACATGCTGCATATGTTCCAGCACCTAAGACAACTCAAGGTACACGATTGCGGTTCACTAGTTGAGATATTTGAATCAGAGGGAGTGGATGAAAATGGAGATGAAGGGTATACTAAAACGCCATACAATTATGATTTGCAAGAAATGCATATGTATGATCTGCCTAAACTGATGCACATATGGAAAAATGATGGTGGAATCCTAGGCTTTACGAATCTTAAAAAGCTAAAGATTCAGTGCTGCCATAGTTTGAAAAGTGTGCTTTCTCCTTCCATGGCCAGAAGCCTTTCACAACTCCAAGAGCTTTCAGTACATGAATGTGAAATGGTAGAGGAGATCATCACTAGAGAGGAGGAGAAAGTATCTGAAGAACCAAACCAGGTGAAGATTACATTCCCAGCATTGCAATGGTTAACCCTTTATTGCCTTCCAAGCCTTAGATGTTTCTGTTCAAGCACTTACCATTTTGAGCTGCCATCCTGCCATgacattatcattataaaatgtCCAGAGATGGAGGCTTGCCATGGAACCATAGGCACCTCAGAACTTCCCTTTGTCTCTATGAAGACAAATTATTTCAGGGCTGGAGAGagatcttaa 6252 0.361 MECLISVATGIVTKVGESLVAPIANQFGYLVYYNKNIKNLKNELKTLEGRKQGVQGMVDEDKRNGRQIVSVVEDWLYKVENIKNEVQEFNDFQVKNSKCHGKWSPYLVLRYSLSKRAKRLTVDVTSLNEEKFEIISYFAPPPRLGSIFSSVIKSFPSRKSIVIEVIEKLKDEDFKRVGICGMGGVGKTTFVKEIIQIPDVGKLFDEVVMAVVSQNVDYRKIQGQIADALGLKFDKETIQGRACQLHDRLKNINNVLIVLDDVWTDLDFESIGIPSNEHHKNCKILFTSRIEDVCYKMRSQKNFIISILSPNESWDLFNEMAGSNLSIKPDIHHIAKEVANECGGLPIAIVTMAKALANKEKHTWEDALDQLKKSSKTSLSEMQACVYSSIKLSYNFLDSEEDKIFLFLCGLFPEDFDIPIEVLLRHGMGLGLFKDIDALWKARNRVHTIIDRLKRRFMLLDSNVEECVKMHDVVRDVVISIASEEEYGLMVQCDASQMEQPKEETWCNSTAVSLMFEETKELPEVLDCPKLKLLQVASKKKELVQENFFQGVNKLMVLSLQNMHIHSMSSVFKALDNIHTLRLEDCQVRDISVIGKQLKKLEILSFANSNIKQLPEEIGQLSLLRLLDLTECNYLIQISANVLARLSRLEELYLRVRNLPSKETNHILFELQSLSHHLKVVEIAVLANEDLPKDLVFKNIVRFWVYVRDSFTLFHGIVRKGYLHPNILRLNNAYYNYIKKSVTIQPLLQKVEMLNLVDIKNLKNVILELSERGFPILKHLSIEYCNTLEYVVDACDGCIFPQLQSFSLRNLDNLKEIVNVASHMSQTIDFAKVDTITSCQCFGSLTNLKIEYCNKLKTVFTLFPRTIILATLQRLHVAESYGIEYIISSKTKYDENSMIEFSNLVELRLQELPNLIGFAKTNVMHERHSTMVQIHDSSVDEFMPISTLFKSNWMQLFPKLEKLFLHACSLLEMVFDMQESKFHGESLAFLFAQLKEIEISWLSKLRHIWGNVPSYIQGFQNLKSIKVKKCDCLRHVLTPNIARALTQLQKMVIHSCHSMEQIVGKEVNLDDDDDEEEEEQNVEAPVFGQLQSLTLFDLPSLVSICSDSYETVWPSLTIFRIEGCPRLKTFATCTSMVARQENFNASSSYSTTCDVANSTSKKDSPRFLQCCLGCTPHAFSNFKAKASSTEKGVRSVGNIYTKEEIGSPVPILEQTQVKGWDSLEVLFLLEQNQHSDASINCLVKLIIAQVPTSPVEVTAFNNLTLLSLDACHKLRYLFPYSIAKLLVKLQEIKMSNCKVVKQLVQGEGEDSSTLSLPQSNSPTEHENSSSSDHATFSQEARALEWPSLKRISITHCGVLEVVIGKEGKKIDTIASFAQLQSLTLSHLPNVVSFCFTPCASEPPSFENCHGISYENHEGTSIEERRIMRLDPLINGFIFPNLTYLAITGCNKISCLFSPSTSTSFVRLIELDICGCRDIKEIVSTEETQRNVIKVVFRSLQCLKLENLSKLRAFCQGSYDFDFPSLHEVFVKNCHVMETFSHGPSYTPKLDRVTMEIGNITKNIWMGDLNATVPLCKALVCNILNPYPFVCLAFQTSETLEWIKQDQCTLRYFTEEKHMTVEGFQRLLNLVPSNCMYIFQNLKELTIKNCGSLVEVFESRGVDVKKVQAMIHYKLESMNLYSLPKLIHVWKNHGGILGFQKLRILRVEHCGNLCSLFSPTIARSLVQLWHLRVHSCHIMEEITTKEDEETEGSNNATIVFPLLNKLELRYVPNLKCFCSGTFNIDLPSCEEMIIEKCPKMTTFCYGSVTTAKLLHIYKGSYEYVDIIGDLNMTIYHANESLKVALQTSETITCIEHDQHLLPYLRSDTELVIEGNEKLLNCIPSNMLHMFQHLRQLKVHDCGSLVEIFESEGVDENGDEGYTKTPYNYDLQEMHMYDLPKLMHIWKNDGGILGFTNLKKLKIQCCHSLKSVLSPSMARSLSQLQELSVHECEMVEEIITREEEKVSEEPNQVKITFPALQWLTLYCLPSLRCFCSSTYHFELPSCHDIIIIKCPEMEACHGTIGTSELPFVSMKTNYFRAGERS 2083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2124 2083 MobiDBLite consensus disorder prediction 1310 1333 - -
Ssu8g2124 2083 Gene3D Ribonuclease Inhibitor 944 1161 IPR032675 -
Ssu8g2124 2083 Gene3D Ribonuclease Inhibitor 1612 1819 IPR032675 -
Ssu8g2124 2083 Gene3D Ribonuclease Inhibitor 1371 1556 IPR032675 -
Ssu8g2124 2083 Gene3D Ribonuclease Inhibitor 1867 2068 IPR032675 -
Ssu8g2124 2083 SUPERFAMILY RNI-like 1693 1995 - -
Ssu8g2124 2083 PRINTS Disease resistance protein signature 176 191 - -
Ssu8g2124 2083 PRINTS Disease resistance protein signature 619 635 - -
Ssu8g2124 2083 PRINTS Disease resistance protein signature 342 356 - -
Ssu8g2124 2083 PRINTS Disease resistance protein signature 249 263 - -
Ssu8g2124 2083 Gene3D - 307 391 IPR042197 -
Ssu8g2124 2083 Pfam NB-ARC domain 161 395 IPR002182 GO:0043531
Ssu8g2124 2083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 408 IPR027417 -
Ssu8g2124 2083 Coils Coil 354 374 - -
Ssu8g2124 2083 Gene3D - 392 480 IPR036388 -
Ssu8g2124 2083 PANTHER - 1437 1571 - -
Ssu8g2124 2083 PANTHER - 1259 1400 - -
Ssu8g2124 2083 PANTHER RPP4C3 27 800 - -
Ssu8g2124 2083 PANTHER RPP4C3 834 922 - -
Ssu8g2124 2083 SUPERFAMILY L domain-like 469 859 - -
Ssu8g2124 2083 Coils Coil 30 57 - -
Ssu8g2124 2083 PANTHER - 27 800 - -
Ssu8g2124 2083 PANTHER - 1011 1147 - -
Ssu8g2124 2083 PANTHER - 834 922 - -
Ssu8g2124 2083 PANTHER - 1953 2056 - -
Ssu8g2124 2083 Gene3D - 148 306 IPR027417 -
Ssu8g2124 2083 SUPERFAMILY RNI-like 1396 1743 - -
Ssu8g2124 2083 Gene3D Ribonuclease Inhibitor 482 942 IPR032675 -
Ssu8g2124 2083 PANTHER RPP4C3 1011 1147 - -
Ssu8g2124 2083 PANTHER RPP4C3 1698 1816 - -
Ssu8g2124 2083 PANTHER RPP4C3 1437 1571 - -
Ssu8g2124 2083 PANTHER RPP4C3 1259 1400 - -
Ssu8g2124 2083 PANTHER RPP4C3 1953 2056 - -
Ssu8g2124 2083 PANTHER - 1698 1816 - -
Ssu8g2124 2083 SUPERFAMILY RNI-like 748 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2124 Ssu-Chr8 55634372 55645207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2124 166 485 WRKY Transcription Factor Family AT5G45050 26.946 1.89e-10 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2124 - - vra:106757704 3137.05