Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2120 ATGAAAGCAGAAGAACACTTTCAACTTCCTCATCAATCTCAcgCTTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCAACTGTGAGTGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACATACCGGCGCCAATTACGTTGGCGCAATGTCGAAATCAATAACGCATCTGGTGTGTTGGAAatttgaaggaaagaaatatgATATTGCGCAAAAGTTTAGAATACTTGTAGTTAACCACCGATGGATTGAGGACTCCATAAGGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACGTGAAGTAGGGCCGTTGTTACTGGAAGTTCCCGTCATTGTCCGAGCCAGTAgcttaacaaagaaaaaattggtCAGTGACAAGTTACATGATACTGGGCATGAAAGGCAAAAAACCAACTTCGGCTCTGGAGCTTCAGGAACTGATGTTTTGGAAGATTCTTGTTTAatgaaaaggCATGAGGAGTCAAGTTCATATTCGTCTAGACTGTCaaggaaaggaaaaagggaTATTTGCAATGGGAGGGGAGTCAGTACTGTGGTTGGTCCTTCTCGTAAAGGAAGAAGACTTGTGAGAAATCTTGTTGATGAAGTGGTGTTGGATCCTTCAATTTTGGATTTAAGCCCAGATGACCGCCTTTTTAGAATGGATAGACTACAAACTGATGCTGCAGCTACCTCTAGCCTTTCTGTTGATGTcaataataacattattctaCAAAATAGTGAAGGAAATGATGCTGGATTAAGGAATCAAATTAGAACTATCAATGATGGTTCAGATGATATTGAACAGATCAAAGATTCAAGTCATATATCTACACCTAGAAATTCAACTTTATTTATAGAAGATCCCCTACCTATGCCACATACATCAATAGATTTATGTTCCAGTGATGATGAAAAATTCAGAGAGGGTGATCAGGTTGATAATGTTGCTGGCTTACCTACTTCAACAGAGTTGTCATGTGTTATATGTTTCACAGATTTCAGCTCAACAAGGGGGATTCTGCCTTGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCATAGGacTTCAATGGGAAAAACATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAGTATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGATATTTTTCTCCCCATGGATCAAGAATTACCAGATAATATCTTTGAGTCCTCACAGGCAAGCGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGCTGCGATGTTTGCCGGACTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGACCATGGACATGCAGTCACTGCAAGGAACTTCGGATGCTTTATCGTAGTAATTACACGTATTAG 1470 0.4007 MKAEEHFQLPHQSHASPVQGMERVVATVSGYHGSERFNLIKLISHTGANYVGAMSKSITHLVCWKFEGKKYDIAQKFRILVVNHRWIEDSIREGRRVPEDSYTLQSGREVGPLLLEVPVIVRASSLTKKKLVSDKLHDTGHERQKTNFGSGASGTDVLEDSCLMKRHEESSSYSSRLSRKGKRDICNGRGVSTVVGPSRKGRRLVRNLVDEVVLDPSILDLSPDDRLFRMDRLQTDAAATSSLSVDVNNNIILQNSEGNDAGLRNQIRTINDGSDDIEQIKDSSHISTPRNSTLFIEDPLPMPHTSIDLCSSDDEKFREGDQVDNVAGLPTSTELSCVICFTDFSSTRGILPCGHRFCFPCIQSWVDHRTSMGKTSTCPLCKASFVMIKKVEHAATADQKVYSQTIPCDNSASDIFLPMDQELPDNIFESSQASACVVCRGREPEDLLESCDVCRTRKIHSYCMDPPLRPWTCSHCKELRMLYRSNYTY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2120 489 ProSiteProfiles Zinc finger RING-type profile. 337 382 IPR001841 -
Ssu8g2120 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 407 IPR013083 -
Ssu8g2120 489 SUPERFAMILY BRCT domain 16 105 IPR036420 -
Ssu8g2120 489 Pfam Zinc finger, C3HC4 type (RING finger) 337 381 IPR018957 GO:0046872
Ssu8g2120 489 Pfam twin BRCT domain 24 86 IPR001357 -
Ssu8g2120 489 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Ssu8g2120 489 Gene3D BRCT domain 17 109 IPR036420 -
Ssu8g2120 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 488 IPR013083 -
Ssu8g2120 489 PANTHER F5A8.9 PROTEIN 125 484 - -
Ssu8g2120 489 PANTHER F5A8.9 PROTEIN 17 165 - -
Ssu8g2120 489 SMART BRCT_7 18 94 IPR001357 -
Ssu8g2120 489 ProSiteProfiles BRCT domain profile. 13 104 IPR001357 -
Ssu8g2120 489 SMART ring_2 337 381 IPR001841 -
Ssu8g2120 489 SUPERFAMILY FYVE/PHD zinc finger 432 479 IPR011011 -
Ssu8g2120 489 SUPERFAMILY RING/U-box 332 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2120 Ssu-Chr8 55589970 55595627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2120 58 110 Core DNA Replication Machinery Family AT4G02110 48.148 1.54e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2120 - - gmx:100815034 814.683