Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2100 ATGCAATGCAATCAATCTTGGAGCTGCATAACATGTACCAAGGCATGCAATAATTTGTTCTCTTCCGATCCAACACAGTCTCTGATTCTGCAGCTGCCTGTGGCGATGGCCGCTCTCTCCGATCGCCGCCGCATGCTCCCAATGGAGGACATCGATGCGCAGCCAATAATGGCAGAGTCTGTTTCTAACAACCACCGCGGGATGCACCGGCGCGTCGCCGGAAAAAACGGCCGACATCACCTCACTCGACAGGAATCTTTGCGGAGAGGTATTGGCCACGTCGCCGCAGAAACGTACTTGATTACTCGTCTCGCCTTTACGCTTCTTCGGTATCTCGGGATTGGTTACCGTTGGATGACACAATTGCTTGCCCTTGGATGTTATGCCATGCTACTTATGCCTGGATTCTTACAAGTTGCATATTACTATTACTTCTCAAACAAGGTAAAGCGAAGCATTGTTTATGGAGATCAGCCTAGAAACAGGTTGGATTTGTATCTACCTGCTGATATTGATGAACCTAAGCCAGTTTTGATATTTGTAACTGGCGGAGCATGGATTATTGGGTATAAGGCATGGGGCTCCCTTTTAGGACTACAGTTGGCAGAAAGAGGCATTATAGTGGCATGCATTGATTACAGAAATTTTCCTCAAGGGACCATCAGTGACATGGTAAATGATACTTCTCAGGGAATTTCCTTTGTCATCAACAACATAGCTAATTATGGAGGTGACCCTAATAGGATTTATCTAATGGGGCAATCTGCCGGTGCTCATATTTCTTCTTGTGCTTTACTGGAGCAAGCAAGCAGAGAATCAGGAAAAGGAGATAGTGTTTCTCGGAGCATTTCCCAGATAAaagcttattttggtttgtcTGGAGGATACAACTTACTGGATTTAGTGGACCACTTCCACAATCGTGGCTTGTatcgttcaatttttttaagCATTATGGAAGGTGAACAATCTTTGAAGAAATTTTCTCCTGCAATCAAAATTCAAGATCCATGCTTCAAATGTTCCATTCCTCTCTTTCCCCCTGTATATCTGTTCCATGGAACTTCTGATTATTCCATACCATCAATTGCCAGTGAACAGTTTGCTGATGCTCTTATGAAGGCAGGGGCAAGAGCTGAGGTGATTTTGTATGAGGGGAAGACTCATACAGATTTGTTTCTCCAAGATCCACTCCGAGGTGGTAAAGATGACCTATTCGATCAAATAGTTGCCATTGTACATTCCAATGATAGTGATGCACTTGCAAAGGATGCCACTGCACCCCCAAGAAGACGGTTTGTTCCTGAGATTTTATTAAAGTTGGCTCACAAGATCAGTCCCTTCTAA 1347 0.4336 MQCNQSWSCITCTKACNNLFSSDPTQSLILQLPVAMAALSDRRRMLPMEDIDAQPIMAESVSNNHRGMHRRVAGKNGRHHLTRQESLRRGIGHVAAETYLITRLAFTLLRYLGIGYRWMTQLLALGCYAMLLMPGFLQVAYYYYFSNKVKRSIVYGDQPRNRLDLYLPADIDEPKPVLIFVTGGAWIIGYKAWGSLLGLQLAERGIIVACIDYRNFPQGTISDMVNDTSQGISFVINNIANYGGDPNRIYLMGQSAGAHISSCALLEQASRESGKGDSVSRSISQIKAYFGLSGGYNLLDLVDHFHNRGLYRSIFLSIMEGEQSLKKFSPAIKIQDPCFKCSIPLFPPVYLFHGTSDYSIPSIASEQFADALMKAGARAEVILYEGKTHTDLFLQDPLRGGKDDLFDQIVAIVHSNDSDALAKDATAPPRRRFVPEILLKLAHKISPF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2100 448 Pfam BD-FAE 163 372 - -
Ssu8g2100 448 SUPERFAMILY alpha/beta-Hydrolases 139 416 IPR029058 -
Ssu8g2100 448 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 48 439 - -
Ssu8g2100 448 PANTHER ARYLACETAMIDE DEACETYLASE 48 439 - -
Ssu8g2100 448 Gene3D alpha/beta hydrolase 142 397 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2100 Ssu-Chr8 55075579 55083891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2100 77 448 Carbohydrate Esterase AT1G26120 68.548 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2100 K15889 - gmx:100788814 717.998