Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2095 ATGTCTGAATCAGAAGCAAAAGCTTCTCTCCTGTCAGATATTGAGCGTTTTATAAGTGAAAAGATTATACTTGCCAACAAGGTGATAGTGAAGCATGCTGTCACCAAAATCAGAGATGGTGATGTTCTTCTAACTTATGGGTCCTCAACAGCTGTTGAAATGATACTATTACATGCACATGAGTTGGGAAGACAGTTTCGTGTTGTGGTAGTTGACTCTCGTCCAAAGCTTAGAGGGCAACTTTTACTTCGCAGGCTTGTGGAGAAAGGTCTTAGCTGCACATATACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTTACTCGAGTTTTTCTGGGTGCTTCATCAGTTTTGGCTAATGGAACAGTATATTCAAGGGTAGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTCCAGCTGGATTCAATATGCTCAAATGAACTTGGTGATCCAAATGTCATTTCAAATGTACTGGGTAGAGAGGATGTCAACTACTTGGATGGCTGGGCCAATATTGAAAATATGCAACTTTTAAATCTGATTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACAAGTGTGCCTGTAATTGTAAGAGAATATGGGAGAGAACAGGTCTGGATATAA 717 0.4017 MSESEAKASLLSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSTAVEMILLHAHELGRQFRVVVVDSRPKLRGQLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLANGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPNVISNVLGREDVNYLDGWANIENMQLLNLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2095 238 SUPERFAMILY NagB/RpiA/CoA transferase-like 2 231 IPR037171 -
Ssu8g2095 238 Pfam Initiation factor 2 subunit family 3 221 IPR000649 GO:0044237
Ssu8g2095 238 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 1 238 - -
Ssu8g2095 238 Gene3D - 24 231 IPR042529 -
Ssu8g2095 238 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2095 Ssu-Chr8 54972951 54974705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2095 1 238 Eukaryotic Initiation Factors Gene Family AT5G38640 81.513 3.60e-147 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2095 K03680 - gmx:100775998 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2095 8 54972951 54974705 Ssu8g2095 8 54972951 54974705 ECH
Ssu3g0251 3 4576000 4583008 Ssu8g2095 8 54972951 54974705 ECH