Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2094 ATGGATCCCTCTCGCCGAACCCCACGCGCGGTGATCGACCCCGTCCCGAAGTTCCGCCAAGTCGGGTTCTTCGCCCCGCCCGAGCGCTCCCGATCGGGTCCTCCCGACCCGACCCGACCCTCTCCGCAAGTCCACTACTTCTCCCCCTCCGCCAACTCCCCCTCCCCCGTCATGATCCCGCCGCCGCGCCACCTCTCCGACAACCTCCTCCTGCACGTCCGCCCCGCCGCCTCCCCCCTCCGCTCCGACTCCGCCGACGGGAGCTCCTTCGACGCCGCCGATTTCTTCCCCGCTCCGCCGTCGCCCGCGCCGTCGTCGTCGTACTCCAGCAGGATCGCCGGCGAGGGAGGGTTCTTCAACGGCGCCGGCCGCGGCAAGGGGAATGGTGCCGGGAAGGTGGCGGCGTCGTCGTCGTTCCCCCGCGGAGGATTCGACTTGACGGCGATGAAGGCGAGCGCCGTGCCGGCGAGCGGGTTGACGACGGTTTCGGTGGTGAATGATTCGCTCGGGATTCCCGaaaaagaaaaaggaaacaaaggagGAGGTACAGCAGTGGAAGTGAAAGACCAAGCAACTAGTTCAAAACAGCAGAAACCAAAAACCTCAAAAGCTGAGAGACGTGCTCTTCAAGAAGCTCAACGAGCTGCAAAGGCTGCAGCAAAAGCTGAAGGAAATAAGGCATCTGGAACTGCAGCTTCAATGAGTGCAAAATCAGCTAAAGCTGTAAAGCCTGCACAGAAAGTTGATAATGCAGCAGTTGCAGCCCCTGAAAAGAAGGGAGGTGAGATTCCACCAGAAAAGGATAGGAAGAAAGATGCTCCTCAACCACGCATGCAGTATGATGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGTGCTGTGGTGAAACAAACTGAAGCGAGGAACAGAGTTGAGTTGTTCAGGCATTTACCACAATATGAACATGGGAGTCAGCTTCCAGATCTTGAGGCCAAGTTTTTTCATCTTTCTCCAGTGCACCCTGCTGTTTATaagGTGGGTTTGCAGTATCTAACTGGAGATATATCTGGTGGCAATGCTCGTTGTATTGCAATGCTTCAAGCATTTCACGAGGCCGTCAAAGACTACAAGGTTCCACATGAGAAGACTCTCGTGAGAGACTTGACAGCCAAAATTAGTAGTTATGTATCATTTCTTATTGAGTGCCGACCTCTGTCAATCAGCATGGGAAATGCAATTAGGTTTCTCAAAGTCGGATAG 1239 0.5464 MDPSRRTPRAVIDPVPKFRQVGFFAPPERSRSGPPDPTRPSPQVHYFSPSANSPSPVMIPPPRHLSDNLLLHVRPAASPLRSDSADGSSFDAADFFPAPPSPAPSSSYSSRIAGEGGFFNGAGRGKGNGAGKVAASSSFPRGGFDLTAMKASAVPASGLTTVSVVNDSLGIPEKEKGNKGGGTAVEVKDQATSSKQQKPKTSKAERRALQEAQRAAKAAAKAEGNKASGTAASMSAKSAKAVKPAQKVDNAAVAAPEKKGGEIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEAKFFHLSPVHPAVYKVGLQYLTGDISGGNARCIAMLQAFHEAVKDYKVPHEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKVG 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2094 412 Pfam Initiation factor 2 subunit family 348 410 IPR000649 GO:0044237
Ssu8g2094 412 SUPERFAMILY NagB/RpiA/CoA transferase-like 331 410 IPR037171 -
Ssu8g2094 412 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 410 - -
Ssu8g2094 412 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 1 410 - -
Ssu8g2094 412 MobiDBLite consensus disorder prediction 79 141 - -
Ssu8g2094 412 MobiDBLite consensus disorder prediction 168 295 - -
Ssu8g2094 412 MobiDBLite consensus disorder prediction 260 295 - -
Ssu8g2094 412 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2094 Ssu-Chr8 54969442 54972933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2094 4 410 Eukaryotic Initiation Factors Gene Family AT5G38640 58.195 3.03e-120 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2094 K03680 - gmx:100775998 566.614