Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2093 atgtTCCCTTACAGTTCCACCCCCTACTCTTCCTTcccttcatcatcttcttcttcataCCCTCCTTTTCCTTTCCTCAACCTTGAAAATGCTTCTTCAAGCCACACCCTTCTTCATGATCCACTTTCTATGCCTTATATACCAACTCATAATAACCCTGCAAACATCCAAGAAGCACTGACCAATTTGCCAGTCACAGATCATAactgtggtggtggtggtggttctGCAATGACCAAACCTGACCcaagtggtggtggtggtgctcCTCACTATGGCATTTCTTGTTTCCTCACAAAGAAGCCAGCTAAGAAAGATAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGGGACAGAAGGGTGAGGTTGTCCATTGAAATTGCTCGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAAAGCAATGAAGGAGCTGGCAAGGAGCAAACACAGCAACAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCTGAGATCAAGCAGAAACAACAACTCATCACTTGTGATGCTCCTACCCCACACAACCTACAACAAGGGTTGGACTCAAGTGATAACAAGTCACCAACATTGATGGCTGCAAGAGAGAGGATGAAGTTGAAAAGGACACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATGTGCAATGTTAACACCAACACAGGGAGGGTGCAACAAGACTTGAAGAAAAAGTGCCCTGCAATTGAAAATAACCACTCTCAAATCATGCGTCAATCAAGGTCACCTACTCACCCTCACCACCTTGTGGGAAGTGAAGCACCTAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGAAAGTTGAAGCCGTCGTTGATGTCCTCTTCTCACCATCATCACCAAAACCTTGTGATCCCTAAGGAACCACCAagtttcaacaacaacaacaacagtgaGTACCACCCCTTCCCTAACTTGTCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTTTGTGCCATAGCTAGCATGAATCTATCCACagGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTGA 1224 0.4158 MFPYSSTPYSSFPSSSSSSYPPFPFLNLENASSSHTLLHDPLSMPYIPTHNNPANIQEALTNLPVTDHNCGGGGGSAMTKPDPSGGGGAPHYGISCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKKAMKELARSKHSNNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLITCDAPTPHNLQQGLDSSDNKSPTLMAARERMKLKRTQKEPAKMKESREKARARARERTSNKIMCNVNTNTGRVQQDLKKKCPAIENNHSQIMRQSRSPTHPHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLVIPKEPPSFNNNNNSEYHPFPNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2093 407 MobiDBLite consensus disorder prediction 234 257 - -
Ssu8g2093 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 407 IPR005333 GO:0003700
Ssu8g2093 407 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 407 - -
Ssu8g2093 407 Pfam TCP family transcription factor 103 263 IPR017887 -
Ssu8g2093 407 ProSiteProfiles TCP domain profile. 104 162 IPR017887 -
Ssu8g2093 407 MobiDBLite consensus disorder prediction 163 184 - -
Ssu8g2093 407 ProSiteProfiles R domain profile. 245 262 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2093 Ssu-Chr8 54926793 54928125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2093 99 373 TCP Transcription Factor Family AT1G67260 33.214 3.12e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu8g2093 TCP 2.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2093 - - gmx:100801549 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2093 8 54926793 54928125 Ssu1g1962 1 54980013 54981574 ECH
Ssu8g2093 8 54926793 54928125 Ssu6g1112 6 18183512 18184921 ECH
Ssu8g2093 8 54926793 54928125 Ssu8g2093 8 54926793 54928125 ECH
Ssu3g0250 3 4551076 4552286 Ssu8g2093 8 54926793 54928125 ECH