Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2080 ATGGATGTTCAAGTGATAAATGTGGAAGGAAGTGGTCATCAAACTAAGGCGGATGATGGGGATGCAGAACCAAGTGATGGTGAAGTAAATAATGTTGAAAACTATGGATCTCATGTTGAGGATGGGATTTCTGAGCCATACGTGGGCTTGGAATTTGACTCTGTAGATGTTGCTAAGACTTTCTATAATGAGTATGCCAGGCACATGGGTTTTAGCTTTAAAATTGGCCCATATCGTCGCTCTAAAGCTGATGGGGAAAATATGTATCAGGAGTTCGTGTGTGGTAGGGAAGGTTTGAAAAAACGGATAAATGAAAGTTGCAATGCAATGATTAGGATTGAGCTAAAGGGACAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTCCATGGTGAGTTCCAGTAAGGTGCACAATAATTGGCCAAGTAAGCATTTTTCCAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCCAGTGGTGTCATGTATGTATCTATGGATGGGAATCGTGTTTCAAATCAGAATACTCGTGGGATGAAGAATATTCATACTGCTGCTGCTGAACGTAGTCACCCTGTTAAAAATTCCACATTGATGAATTATACTGTTAGGCCTTCTTTTCAAAACAGGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTATTTTAAGAAGATGCAGGCTGAGAACCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGTATGTCTAATGTCTTTTGGGCAGACGCAAGATCAAGGACAGCATACAGTTATTATGGTGACACAGTTCATCTGGACACAACATACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACGGGGGTAAACCATCATGGTCAAATGGTTTTGTTTGGTTGTGCACTCCTTTTGGACGATTCTGAGGCATCTTTTTTATGGCTCTTGAAGACATTTCTGACAGCAATGCATGATCGTCAACCTGTCTCTATAACTACTGATCAAGACAGAGCCATGCAGACAGCAGTTTCTCAAGTTTTCCCACAAGCTCGCCACTGTATTAGCAAGTGGCATATCTTGAGAGAAGGCCAAGAAAAGTTGGCCCATGTATGTCTTGTGCATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACTTAACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTTTATCCTTGATAAATATGAACTCAGAAAAAATGATTGGCTTCAGTCATTGTATAAGGCTCGTGCTCAATGGGTTCCAGCATACTTTCGTGATTCATTTTTTGCAGCAATATCTCCTACTCAAGGATTTGATGGTTCTTTCTTTGATGGGTATGTCAACCAACAGACGACATTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAAGCAGATTTTGAGACAATTAGCACAACACCAGTTCTGAAGACACCTTCACCAATGGAGAAACAAGCTGCTAATctttatacaagaaaaatattttcaaagtttCAAGAAGAGCTTGTTGAAACTTTTGCTTATACTGCAAATAGAATTGAAGGAGATGGGCCAAATAGCACATTCAGAGTTGCAAAATTTGAGGATGACCAAAAGGCATATATGGTCACATTAAACCATTCTGAGTTGAAAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCACGTTTTAACAGTTTTTACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTAAAACGGTGGACAAGGAACGCAAAAAGCAGTACTGGATCGGATGAACATTCCGGTGAATCTCATGCACAGGAGTCTTTGACAGCAAGGTATGGCAATTTATGTAAGGAAGCCATCAGATATGCTGAGGAAGGGGCAGTAACTGTGGAAACTTATAATGCTGCAATAAGTGGTCTTAGAGAAGGTGGAAAGAAGGTTGCTACTGTGAAAAAAAGTGTTGCCAAGGTTACACCTCCTAATAATCAGGTCAGTGGGACTGCTTATGATGACAGGAAAACTCCTACTCCAACTTTGGATACAACTCCTCTTTTATGGCCGCGGCAAGATGAAATAACAAGGAGGTTTAATCTTAATGATGCCGGTGGTCCTGTTCAATCAGTTGCTGATCTAAATTTGCCACGGATGGCCCCAGTCTCTCTTCATCGAGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTGAAGTTGCAAGATTATAGCAGGACTCCGTCCACAGAATCTGAAGTTAAGTTTCATCTCTCCAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGTGAACAGCTCTCAACGCCTGCTAATAAGGTTGCTGTAATAAATCTCAAgCTTCAAGATACCGAGACAACGTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTACGATCAATGGCTTATATCCGTGAGCAGCTTTCTCATGCTGACGATGCACAGTCAGAACCCCAATCGAAAAAGCATAGGAAGTAA 2646 0.4025 MDVQVINVEGSGHQTKADDGDAEPSDGEVNNVENYGSHVEDGISEPYVGLEFDSVDVAKTFYNEYARHMGFSFKIGPYRRSKADGENMYQEFVCGREGLKKRINESCNAMIRIELKGQNKWVVTKFVKEHSHSMVSSSKVHNNWPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTAAAERSHPVKNSTLMNYTVRPSFQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASFLWLLKTFLTAMHDRQPVSITTDQDRAMQTAVSQVFPQARHCISKWHILREGQEKLAHVCLVHPNFQVELYNCINLTETIEEFESSWNFILDKYELRKNDWLQSLYKARAQWVPAYFRDSFFAAISPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETISTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFAYTANRIEGDGPNSTFRVAKFEDDQKAYMVTLNHSELKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPPHYILKRWTRNAKSSTGSDEHSGESHAQESLTARYGNLCKEAIRYAEEGAVTVETYNAAISGLREGGKKVATVKKSVAKVTPPNNQVSGTAYDDRKTPTPTLDTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENKNSTPGNKVAVINLKLQDYSRTPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQSEPQSKKHRK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2080 881 Pfam MULE transposase domain 275 367 IPR018289 -
Ssu8g2080 881 Pfam SWIM zinc finger 559 587 IPR007527 GO:0008270
Ssu8g2080 881 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 809 IPR031052 GO:0006355
Ssu8g2080 881 SMART 26again6 564 591 IPR006564 GO:0008270
Ssu8g2080 881 Pfam FAR1 DNA-binding domain 60 135 IPR004330 -
Ssu8g2080 881 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Ssu8g2080 881 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 33 809 - -
Ssu8g2080 881 MobiDBLite consensus disorder prediction 675 699 - -
Ssu8g2080 881 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2080 Ssu-Chr8 54315701 54323256 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu8g2080 MULE 1.9e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2080 - - gmx:100786516 1640.94