Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2055 ATGGTTTGTGCATCAATCAATGGTCCAGGTTGTTCCTCATTGGGGTATGGGGCATTTGAGGAGCTGGGACCCTTTAGAGTCAACTCTGATGGCAAAACACTATTTCATAACAAATATGCTTGGAATGAAGTCTTAATTTTAGATGATGTGTTCTCCTACAGTGGTGATACTGATGCAAAGGCCCCAGTCACATCTTCCAGATATGCAATCAACACCCTCAAGCTCCCTATTCAGGTTGCTTGGTATCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGGAGTGACATTTGTTACAGTAAGAGGAGCAGGACATTCTGTTCCAAGCTGGCAACCAGCCAGGTCTCTGACCATGATCTTATCATTCCTCTCTGGAAGCCTGCCTCCTGATTCACCATAG 414 0.4493 MVCASINGPGCSSLGYGAFEELGPFRVNSDGKTLFHNKYAWNEVLILDDVFSYSGDTDAKAPVTSSRYAINTLKLPIQVAWYPWYSGNEVGGYVVGYKGVTFVTVRGAGHSVPSWQPARSLTMILSFLSGSLPPDSP 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2055 137 PANTHER CARBOXYPEPTIDASE 7 44 - -
Ssu8g2055 137 PANTHER CARBOXYPEPTIDASE 51 134 - -
Ssu8g2055 137 Pfam Serine carboxypeptidase 8 44 IPR001563 GO:0004185|GO:0006508
Ssu8g2055 137 Pfam Serine carboxypeptidase 50 130 IPR001563 GO:0004185|GO:0006508
Ssu8g2055 137 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 51 134 IPR001563 GO:0004185|GO:0006508
Ssu8g2055 137 SUPERFAMILY alpha/beta-Hydrolases 49 133 IPR029058 -
Ssu8g2055 137 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 7 44 IPR001563 GO:0004185|GO:0006508
Ssu8g2055 137 ProSitePatterns Serine carboxypeptidases, histidine active site. 100 117 IPR033124 GO:0004185
Ssu8g2055 137 Gene3D alpha/beta hydrolase 6 48 IPR029058 -
Ssu8g2055 137 SUPERFAMILY alpha/beta-Hydrolases 8 44 IPR029058 -
Ssu8g2055 137 Gene3D - 49 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2055 Ssu-Chr8 53520885 53527925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2055 53 131 Calmodulin-binding Proteins AT2G22960 35.000 5.44e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2055 K16297 - gmx:100778342 145.976