Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2040 ATGGTGGCAGGTAGAGAACCACTGCCATGGGCTACTCGGGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATTCACGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGTCagcaaatatattaatagacaGAAACTTCCGGGGGAAGGTTGCTGATTTTGGATTGACCAAACTGACAGAAGTTGGAAGCTCATCACTTCCCACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTTTCTCCCAAAGTAGATGTGTATGCCTTTGGAGTTGTTCTTTATGAACTTATTTCGGCTAAGGAAGCAATTGTCAAGACGGGCGACTCTGAAGTCGACTCAAAGGGCCTCGTAGCTTTGTTTGATGGAGTTCTTAGTCAGCCGGATGCTACAGAAGAGCTCTGCAAACTGGTTGATCCAAGGCTTGGGGATAACTACCAAATTGATTCAGTCCGCAAGATGGCACAACTAGCCAAAGCATGTACACAAGACAATCCCCAACTCCGTCCAAGTATGAGATCTATTGTGGTTGCTCTTATGACACTTTCTTCAACTACTGATGATTGGGATGTCGGTTCCTTCTACGAAAATCAAAATCTGGTGAATCTTATGTCAGGAAGATAG 660 0.4333 MVAGREPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDRNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTGDSEVDSKGLVALFDGVLSQPDATEELCKLVDPRLGDNYQIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2040 219 SUPERFAMILY Protein kinase-like (PK-like) 5 199 IPR011009 -
Ssu8g2040 219 PIRSF ILK 3 207 - -
Ssu8g2040 219 Pfam Protein kinase domain 15 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2040 219 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2040 219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 35 47 IPR008271 GO:0004672|GO:0006468
Ssu8g2040 219 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2040 219 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1 4 219 - -
Ssu8g2040 219 Gene3D Transferase(Phosphotransferase) domain 1 2 211 - -
Ssu8g2040 219 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 219 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2040 Ssu-Chr8 53031530 53033055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2040 3 219 Receptor kinase-like Gene Family AT3G21630 69.124 3.58e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu8g2040 Pkinase 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2040 - K13429 gmx:100777781 417.927