Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2032 ATGAAGAGGCTCAATAACTCGGATACTATGGCTACTTCACTTTCCCTGTGCCCATCAAAAGGTGTGAATGAGGGGAAGGAAACTAAGGGTTACAGTGAAGAATTTCAGGCAATGTTGGATAGGTTAGACCAAGAAGACAGCTATGAAGATGCAAGCTTAGTGTTGGAGAAGAAAAGGAGACTCGGTTTTGATCAGGTGAAAGCCTTAGAGAGGAGCTTTGAGTTGGACAACAAGCTAGAGCCAGAGCGCAAGTCAAAGCTAGCAGAAGAACTAGGCCTTCAACCTAGACAAGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGACTATGGCATTCTAAAGTCCAATTATGATGTTCTCAAGGTTGAGTACAACAATCTTGAGCAAGAGAATGAGGCTCTCACTATTCAGGTAagagaattgaaagaaaaattgttcaGAGGTAAGGCTGAAGGCAACGAGTCAATGAAAGAAGAATCTCCCATTTCAGAGTTTGGAGACAGAGGAGCGTCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGCAATGTTGATTCTCCTTTGTGTGTGAATGGATCTTTGCCCAGTTCAAGTTCAGTGACAAACTGGCTTCAATACTCAGATTCAAGAGGGTCTCCTGATAAAACGTTTCAGACTCAGTTTATGAGAATGGAGGAGCAGAATTTATTTAGTATCAATGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAA 768 0.4102 MKRLNNSDTMATSLSLCPSKGVNEGKETKGYSEEFQAMLDRLDQEDSYEDASLVLEKKRRLGFDQVKALERSFELDNKLEPERKSKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQENEALTIQVRELKEKLFRGKAEGNESMKEESPISEFGDRGASESNSNGVVKEESNVDSPLCVNGSLPSSSSVTNWLQYSDSRGSPDKTFQTQFMRMEEQNLFSINEFCFFSVDQSPTL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2032 255 Pfam Homeodomain 61 110 IPR001356 GO:0003677
Ssu8g2032 255 SUPERFAMILY Homeodomain-like 58 124 IPR009057 -
Ssu8g2032 255 MobiDBLite consensus disorder prediction 158 173 - -
Ssu8g2032 255 MobiDBLite consensus disorder prediction 1 28 - -
Ssu8g2032 255 MobiDBLite consensus disorder prediction 175 191 - -
Ssu8g2032 255 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Ssu8g2032 255 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Ssu8g2032 255 Coils Coil 118 152 - -
Ssu8g2032 255 MobiDBLite consensus disorder prediction 1 19 - -
Ssu8g2032 255 MobiDBLite consensus disorder prediction 158 191 - -
Ssu8g2032 255 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Ssu8g2032 255 Gene3D - 55 119 - -
Ssu8g2032 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 184 - -
Ssu8g2032 255 CDD homeodomain 57 113 IPR001356 GO:0003677
Ssu8g2032 255 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Ssu8g2032 255 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Ssu8g2032 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 184 IPR045224 GO:0003700
Ssu8g2032 255 SMART HOX_1 55 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2032 Ssu-Chr8 52693919 52695451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2032 1 153 Homeobox Transcription Factor Family AT2G22430 53.503 4.70e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g2032 Homeodomain 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2032 K09338 - zju:107420758 279.256