Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2026 ATGCTCAACGATTTCCTCCAACTTAAACTCCATATTTCCATATTAGTTGTTCTCCCCAAGTCATCTTCTGCTTTTCCGGACCGAACTCTAGCTTGCAGGTTCATGCCATTTCTGGCCATTAGAGTTATTATCTCTCAAAACTTCTTGCCATTGTCGGTGGCGGCCACCATGACAAGCATAACACATGGTGGCAGCGCGGTGCCAGCAGCGTTACTGAACCAGATGTTTGGAAATAATGGGCTAGATTCTGAGGAGGGTATTAGCCTGCTCATTAGTAGAAAGTTGCTGAAGCTCATGAATGGAGATGTTCGCTATCTAAGGGAAGCAGGCAAATCAGCTTTTATCCTCTCTGCTGCTGCGGTGCATAATTTGAAAGCTTATAAGTTTTGGAAAAGGAATAAGATGATGCAACACAATCTGTTTTGTACATCATAA 435 0.4322 MLNDFLQLKLHISILVVLPKSSSAFPDRTLACRFMPFLAIRVIISQNFLPLSVAATMTSITHGGSAVPAALLNQMFGNNGLDSEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAAAVHNLKAYKFWKRNKMMQHNLFCTS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2026 144 PANTHER PHYTOCHROME A 57 118 - -
Ssu8g2026 144 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2026 Ssu-Chr8 52443257 52444617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2026 33 118 Histidine Kinase Gene Family AT1G09570 44.762 8.55e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2026 K12120 - gmx:100790763 114.775