Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2025 ATGAGAGAAATAAACAACACAGACGTTGTTGATTGCTGGTTTTTATGCTCGGAGATTTGGAAGTATGAACAAAAAGTCTCTTGCGTTTGTTGCTACAACCATTTCGACAAGGTTCCACGTTCCTCCTCCTCAAACTCAATGCCGATTCTACTGTTCTCCACCCTCTCCTTCCTCCAACAAGCTCTTTGTGGGAggtccctttctctctctcttccattTTGCTTCTCCTGTTATGCTCGTTCTTCAGTGTTTATTGACTCTGAGGGTGTTTCAGGGTTGTCATGGTCAGTGGACGAGAAGTCCCTCAAAGACGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGAGGATAGTGTATGACAAAGACAGTGGCAGGCCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAGGCATTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATTTGAACAGGCACTAA 558 0.4211 MREINNTDVVDCWFLCSEIWKYEQKVSCVCCYNHFDKVPRSSSSNSMPILLFSTLSFLQQALCGRSLSLSLPFCFSCYARSSVFIDSEGVSGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRPRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKARGVPVVVPRLSDIGHLNRH 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2025 185 SUPERFAMILY RNA-binding domain, RBD 90 167 IPR035979 GO:0003676
Ssu8g2025 185 Gene3D - 87 168 IPR012677 -
Ssu8g2025 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 164 IPR000504 GO:0003723
Ssu8g2025 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Ssu8g2025 185 PANTHER TRANSFORMER-2-RELATED 76 182 - -
Ssu8g2025 185 SMART rrm1_1 90 160 IPR000504 GO:0003723
Ssu8g2025 185 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 76 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2025 Ssu-Chr8 52421537 52435195 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2025 90 165 C2H2 Transcription Factor Family AT2G19380 38.462 5.17e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2025 - - gmx:100810104 184.882