Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2018 ATGAACAAGAAGTCTCTTGCTTTTGTTGCTACAACCATTTGGACAAAGTTCCACGTTCCTCCTCCTCAAACTCAGTGCCGATTCTACTGTTCTCCACCCTCTCCGTCCTCCGACAAGCTCTTTGTGGGAgGGTTGTCATGGTCAGTGGACGAGAATTCCCTCAAAGACGCTTTCTCTTCCTTCGGGGACGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTCTCAAATGAAGATGATGCCAAATGTGCAAAGGATGTAATGGATGGAAAGGCATTGATAGGTAGACCATTGAGGATAAATTTTGCTCTTGAGAAGGCCCGTGGTGTACCTGTTGTAGTCCCTCAACTTTCAGATATCGGACATTTGAACAGGCACTAA 414 0.4517 MNKKSLAFVATTIWTKFHVPPPQTQCRFYCSPPSPSSDKLFVGGLSWSVDENSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKDVMDGKALIGRPLRINFALEKARGVPVVVPQLSDIGHLNRH 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2018 137 SUPERFAMILY RNA-binding domain, RBD 28 119 IPR035979 GO:0003676
Ssu8g2018 137 SMART rrm1_1 39 112 IPR000504 GO:0003723
Ssu8g2018 137 Gene3D - 18 120 IPR012677 -
Ssu8g2018 137 CDD RRM_HP0827_like 39 114 - -
Ssu8g2018 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Ssu8g2018 137 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 23 134 - -
Ssu8g2018 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Ssu8g2018 137 PANTHER TRANSFORMER-2-RELATED 23 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2018 Ssu-Chr8 52100667 52105768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2018 40 117 C2H2 Transcription Factor Family AT2G19380 38.462 2.06e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2018 - - gmx:100810104 246.514