Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2004 ATGAGAACTAGCTGGCAGCAGGTTTTTACCGAGGAGGAGAACCGGCTGAACCGGTCGCCCATGGCGTTGAAAAACACGGGTTCCTCTTCGTGTTGTGTTCAGGTCAGTGTTGTGTTGGATCAATCTCATCTTTATCATTCGATCTGCCCTTCGGGTTCATCAGGACATTGTATCTTCTTCTGTAACATCAACCAAGGATCCTCTCCAAAAATGCTCCCTCTGCGTCCACAATCACAGGTTGGAGGACTACAAACATCGCTGTCTCTTGTTTCTTCAGACCCTCGCCTGTCTCCTGATGAACCTAGGTCAAATTCTGACAATGTCCGTGAATCTCCAGCTGAAAGTGCAAGTTCTCAAGAAACTTGGCCTACAGCTGATGTAGCCGCAGCAAGGAAGATGGAGAATGGAAAAGCAGAGGTTAATTGCCTTGAGCAGAAAGTTATTCACCGTGTTTCTAGTGCTGATAAAGTTACTCTTCAGGACATTGCAAGAGAAAGTGTGGGTACGATATGTGAAAAAATGCATCGTCTACCTGATGAATATCTAGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCGCAGCATAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTTCACAGTAGAACTGATTTAACAGCCAAGTCACTGGTCAGAGCACATCGAGTGCAGCTCGAAATCCTTGTTGCAATAAATACTGGAATTCAGGCATTTTTGCATCCTAGCATCAGCCTGTCACAGGCTTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACACTAATGGTTTCTGTAATCTTTGCATGTGCGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGGGAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGCGGAGCAGGACCAAATGAAATGGTTTTCAGTTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTCTTCCAGCACTGTGCGCCGTCATGGGACGGAGAGGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGGAGTAAAGATCCCCGAGGGAGAAAGCTATATTGGAAGTGTGATGATCTCatggaaaaattgaaaagtaaaaaaatggaTTCAAAGGCTGCTTGCAGGgcaatattgatttttttccaAGGTACTAGAAATCTAGTTTTTCtgcctttttatatatataataaggcAATATCAtgcttttacattttgtttcctttatatttattgaattctgTTATGTCTAAATTATGGTAA 1410 0.4085 MRTSWQQVFTEEENRLNRSPMALKNTGSSSCCVQVSVVLDQSHLYHSICPSGSSGHCIFFCNINQGSSPKMLPLRPQSQVGGLQTSLSLVSSDPRLSPDEPRSNSDNVRESPAESASSQETWPTADVAAARKMENGKAEVNCLEQKVIHRVSSADKVTLQDIARESVGTICEKMHRLPDEYLEELKNGLRVILEGGNGSQHREEFFILQKLVHSRTDLTAKSLVRAHRVQLEILVAINTGIQAFLHPSISLSQASLIEIFGYKRCRNIACQNQLPADDCTCEICTNTNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSSKSGAGPNEMVFSCQACNRTSELLGWVKDVFQHCAPSWDGEALMRELDYVSRIFHGSKDPRGRKLYWKCDDLMEKLKSKKMDSKAACRAILIFFQGTRNLVFLPFYIYNKAISCFYILFPLYLLNSVMSKLW 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 215 230 IPR004082 -
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 173 195 IPR004082 -
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 375 394 IPR004082 -
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 302 322 IPR004082 -
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 256 277 IPR004082 -
Ssu8g2004 469 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 230 245 IPR004082 -
Ssu8g2004 469 SMART PHD_3 295 355 IPR001965 -
Ssu8g2004 469 MobiDBLite consensus disorder prediction 87 123 - -
Ssu8g2004 469 MobiDBLite consensus disorder prediction 108 123 - -
Ssu8g2004 469 Pfam PHD - plant homeodomain finger protein 265 388 IPR032881 -
Ssu8g2004 469 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 45 433 IPR004082 -
Ssu8g2004 469 CDD PHD_OBE1_like 295 354 - -
Ssu8g2004 469 PANTHER PROTEIN OBERON 2 45 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2004 Ssu-Chr8 51679086 51681611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2004 265 367 PHD Gene Family AT5G57380 31.731 4.24e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2004 - - gmx:100781890 699.508