Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2000 ATGACGCACCCACTCGCGAACGAGATGAACAGGAAAGGCCAGAACGAGAAGCAGGACTTGGTGCCTTCTACTGCGGACGACGTTAACGATGCCAGCGTGGACGACGAGGACTTCATTCTCAGCCAGGACCTGTTTTGCACACCAGATTACATAACCCCAGATAACCAGTTTCCTTTGAAAGGCTTCGATGTCAATATCGACTTGGAAGAGGAAGATGCCCCATGCCCCAAGTCACCGGAGAAGCCAAGCACTACAAAAAACAAGAGATGCCGGATGGATGCCATCTCGGGAGATACTTTGAGTCCTGCCTCTTCTAATGATCATCAGTCAATTGTGGAACTTGGGAGGGACTTTGTTGGAGAGGAAGTCACTAATAAGCCGAAGGCTCGAAATTATGTGTCACATTCTGCAATTGCATTGCGTAGCAGGGTTATGCCTCCTCCTTGCATTAGAAACCCCTATTTGAAAGGCCTTTCAGAGAAGGAAATGGACCCTTTGGGAAGCCAAAGATCAAAATGTGCAGGTCACTTCCCTGCACTTACTGGTGGTGATGGTCTTTCACGCTACCGCACCGACTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTTAGCAATGTTTTCAAAGTATTGAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACCAGACAGTTGTGCAGGGAAGCAGAAAGGATAAAAGCTTTGATGGAAGTTCAAGCTTTGGCTGCCTTAGGTTTCCATGAGAACATTGTGGGGTACTATTCTTCATGGTTTGAAAATGAACAACTGTATATTCAGATGGAGCTATGTGATCACAGCTTATCCATAAACAATTACCCAGCATTACTTACTGCACGACATGAAATAGAAGCTTTATATCAGGTTGCCAGTGCATTGCAATTTATTCATGGGAAGGGAATAGCTCATCTTGATGTTAAGCCTGAAAATATTTATGTCAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTACGAGATAATAGCCTGCCAATTGAGGAGGGTGATGCGCGTTATATGCCTCAGGAAATCTTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTTCTCCCTGGGAGCTTCCATGTTTGAGCTAATTAGCAGGTCGCGTTTGCCAGAATCAGGAAGTCAGTTCTTTAATCTTAAAGAGGGGAAGTTGCCACTCGTGCCAGGAGTTTCAGTGCAATTTCAAACCTTGCTTAAGGTCATGATGGACCCTGATCCGGTTAAGCGGCCTTCTGCTACAGAATTAGTGGGGAATCCAATATTTAACAGGGTCCTTAACAtagcaaaaaattaa 1341 0.4415 MTHPLANEMNRKGQNEKQDLVPSTADDVNDASVDDEDFILSQDLFCTPDYITPDNQFPLKGFDVNIDLEEEDAPCPKSPEKPSTTKNKRCRMDAISGDTLSPASSNDHQSIVELGRDFVGEEVTNKPKARNYVSHSAIALRSRVMPPPCIRNPYLKGLSEKEMDPLGSQRSKCAGHFPALTGGDGLSRYRTDFHEIEQIGRGNFSNVFKVLKRIDGCLYAVKRSTRQLCREAERIKALMEVQALAALGFHENIVGYYSSWFENEQLYIQMELCDHSLSINNYPALLTARHEIEALYQVASALQFIHGKGIAHLDVKPENIYVKNGVYKLGDFGCATLRDNSLPIEEGDARYMPQEIFNENYDHLDKVDIFSLGASMFELISRSRLPESGSQFFNLKEGKLPLVPGVSVQFQTLLKVMMDPDPVKRPSATELVGNPIFNRVLNIAKN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2000 446 MobiDBLite consensus disorder prediction 1 32 - -
Ssu8g2000 446 Pfam Protein kinase domain 193 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2000 446 SUPERFAMILY Protein kinase-like (PK-like) 186 439 IPR011009 -
Ssu8g2000 446 PANTHER BNAA08G27310D PROTEIN 29 351 - -
Ssu8g2000 446 PANTHER BNAA08G27310D PROTEIN 364 440 - -
Ssu8g2000 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 364 440 - -
Ssu8g2000 446 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Ssu8g2000 446 SMART serkin_6 193 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2000 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Ssu8g2000 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 29 351 - -
Ssu8g2000 446 Gene3D Phosphorylase Kinase; domain 1 184 273 - -
Ssu8g2000 446 Gene3D Transferase(Phosphotransferase) domain 1 275 442 - -
Ssu8g2000 446 ProSiteProfiles Protein kinase domain profile. 193 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2000 Ssu-Chr8 51644180 51650558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2000 29 440 Core Cell Cycle Gene Families AT1G02970 60.952 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Ssu8g2000 Pkinase 9.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2000 K06632 - gmx:100784055 681.019