Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1997 ATGACATTCGTTGACGACGTCGACCTGGACCCGTCGGACTTGGCGCCGTCGGTGCCGGTGAAGAAGGTCCCAAACGGGGACGTTTTCGAGGCGTCCCGCGCCGGCGACGTGGAGCGGCTCCGGTACCTGCTGGAGGCGGGAGTGAACGTGAACGCGCGGGACCAGTGGGACTCGGCGGCCCTCTACTACGCCTGCCTCGCCGGCCACCTCGACGCCGCCCGCCTGCTCCTCGAGAACGGCGCCATCTGCTCCGAGCACACCTTCGACGGCGACCGCTGCCACTACGCCGCCCTCAATCTGAAGGTCCGCAAACTCCTCAAGGCCTTCGAGGCCCGGCCCCCGCCCCTGGACCCCTTGCAGGCAGCTTTGCGCGACACCTTCCTTGCCGGTGCCCAATTTCATTTCGTCGGGTCCATTTGCAGCCACTTCCCTCCAGATGTAGTTTTTATTGTACAAGGAAAACCTATTCAAGCTCACAGAGTGATATTAAGTGCAAGGTCaccatttttcaagaaaaagttTACAGCTGATTGGAAGGAGCGCTGTGAAATAAGATTCTCAAGGGAAAGGTTGTCATATTCTGCACTTTATAGCCTTATACACTTCTTTTATTCGGACAGATTAGAGATTGCTGTTGATGACATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAAATGTGAATCACTGCAGAAAGTTCTTGAGAAAGAAGTGATTCATCAAACATATGCAGAGTATAAAGCACTGAGAGATGTAGATAATTCTCAGAAACGGTATATGTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCAGCAGCCTTGCGTCGAATCCTTCTGACTGCCCTTTCAAATTCGACCCATGCAAGTGGTCAAGAAGATGAAATTGATAAATTGTTATCTAGGATGGGTGCCATGCAGATGGCTAAATCTGTCAATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAAATTTTTTCGCTGTCACCAAATTATTCTAGCATCTAGGTCAGAATATTTCAAAGCAAGATTATCACATATGAAGGACTTCAATGAAGGGAAAGATAAGTTATCTGTTGACATCCTTCCTTGTCTGGAAGAACATGACTTGAGAATGGAAGCTTTTGAGAAAATGATTGAGTATATGTACACTGATCGTTTGCAGGATATAAATCCAGATCAGGCTGGGGAAATGTTGGATGTTGCTTCTAGATACTTATTGTTTCCTCTCAAGCGGGTAGTGGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCACCTGAAGAACTTTGCCATTGGTTAACACTAGCAGACATGTATGGTGTTTTCAAGATTCGGGAATATTGTCTAGACACCATTGcttgtaattttgaaacatttgcTGATACTAAAGAATTCCGGGCAATGTTGTTGACTTTGCCTCCACCATCTGGAGACTCGTGTCTTCGTACCACTGTCCCGAGCATTCCTGGATCTGCTCTAAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATTGAAGCTGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGTCTAGAGATGCTTATGCTTGTTGCAGAGCAAGAAAAATCATCAGACAATTCTGATTCAGATGGTATTGATGACACCCTTGGCTTTCTTCCCAATCACCACTCTGATTTAAGGTGA 1710 0.4579 MTFVDDVDLDPSDLAPSVPVKKVPNGDVFEASRAGDVERLRYLLEAGVNVNARDQWDSAALYYACLAGHLDAARLLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLDPLQAALRDTFLAGAQFHFVGSICSHFPPDVVFIVQGKPIQAHRVILSARSPFFKKKFTADWKERCEIRFSRERLSYSALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKVLEKEVIHQTYAEYKALRDVDNSQKRYMLQGLSLPEEDRLPAALRRILLTALSNSTHASGQEDEIDKLLSRMGAMQMAKSVNDLADVCVKVDRKFFRCHQIILASRSEYFKARLSHMKDFNEGKDKLSVDILPCLEEHDLRMEAFEKMIEYMYTDRLQDINPDQAGEMLDVASRYLLFPLKRVVADVLLPHLEMVSPEELCHWLTLADMYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSCLRTTVPSIPGSALNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSSDNSDSDGIDDTLGFLPNHHSDLR 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1997 569 Pfam Ankyrin repeats (many copies) 30 77 IPR002110 GO:0005515
Ssu8g1997 569 CDD BACK 428 471 - -
Ssu8g1997 569 SUPERFAMILY POZ domain 312 423 IPR011333 -
Ssu8g1997 569 Gene3D Potassium Channel Kv1.1; Chain A 140 242 IPR011333 -
Ssu8g1997 569 SUPERFAMILY POZ domain 141 237 IPR011333 -
Ssu8g1997 569 ProSiteProfiles BTB domain profile. 145 212 IPR000210 GO:0005515
Ssu8g1997 569 SUPERFAMILY Ankyrin repeat 30 107 IPR036770 -
Ssu8g1997 569 Gene3D - 28 138 IPR036770 -
Ssu8g1997 569 Pfam BTB/POZ domain 315 419 IPR000210 GO:0005515
Ssu8g1997 569 Pfam BTB/POZ domain 144 241 IPR000210 GO:0005515
Ssu8g1997 569 MobiDBLite consensus disorder prediction 542 569 - -
Ssu8g1997 569 CDD BTB_POZ_ZBTB_KLHL-like 316 407 - -
Ssu8g1997 569 Gene3D Potassium Channel Kv1.1; Chain A 284 456 IPR011333 -
Ssu8g1997 569 ProSiteProfiles BTB domain profile. 317 393 IPR000210 GO:0005515
Ssu8g1997 569 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 5 540 IPR044515 -
Ssu8g1997 569 SMART BTB_4 145 242 IPR000210 GO:0005515
Ssu8g1997 569 SMART BTB_4 317 424 IPR000210 GO:0005515
Ssu8g1997 569 ProSiteProfiles Ankyrin repeat profile. 31 55 IPR002110 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu8g1997 BTB 2.7e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1997 K10520 - gmx:100812009 988.793