LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1989	ATGAAGTTGAAGAAACGTGGTAAACATGTTTTGTTCTGCACCAAATGGCGAGAGTTTGTAAAATACTATTCTCTCAGTTATGGTTCCCACCTAGTCTTCAGATATGAAGGTAGTTCAAAATTTCGTGttcttatatttgatattactTCTGCTGAGATTTGTTATCCATGCAAAAGTGGGGGCACTAATGGAGAAGGAGAACCAAACTTGGACAATAACACTCACCCTAATTGTCCTGGGAAGAGATCCAAGCTTGATGTAGATGTAGATGATGTGAACTTAAAAAGTCAGAGCAAGCCcaggaaaaaagaaagttcTTCTTCTGATGGGAAACGAGTCAAAAATGGAGGTAGTGAAAACCAATCTTCTTTGGAAATAGCAAAGAATGGTGCCAATAGATTCAAGCCCAAAAACCCTTCTGTTACTTCAACCATCAAGGCTCGTCAGTTGTATGTGGGAAGTGAATTTGCTGCCAAGTATCTGAAGCCAAAAGTTGGTATGATGCTCCAAAATTGTAATGGGGAGCAGTGGGGTGTTTCTTGCATATCTCATTGTGGCGGCAGAGCAGTGATAATAGCGAGGGGGTGGCCTAAATTTTTTAGGGACAACGATTTATCAGAAGGAGATCCTTGTGTGTTGGAGTTGATCAAGAGGAACCCGGTTGTGCTAAAACTTACTGTATCCTCTCTACTGTAA	696	0.3937	MKLKKRGKHVLFCTKWREFVKYYSLSYGSHLVFRYEGSSKFRVLIFDITSAEICYPCKSGGTNGEGEPNLDNNTHPNCPGKRSKLDVDVDDVNLKSQSKPRKKESSSSDGKRVKNGGSENQSSLEIAKNGANRFKPKNPSVTSTIKARQLYVGSEFAAKYLKPKVGMMLQNCNGEQWGVSCISHCGGRAVIIARGWPKFFRDNDLSEGDPCVLELIKRNPVVLKLTVSSLL	231

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1989	231	PANTHER	B3 DOMAIN-CONTAINING	94	227	-	-
	Ssu8g1989	231	PANTHER	B3 DOMAIN-CONTAINING	1	84	-	-
	Ssu8g1989	231	MobiDBLite	consensus disorder prediction	81	110	-	-
	Ssu8g1989	231	CDD	B3_DNA	142	219	IPR003340	GO:0003677
	Ssu8g1989	231	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1	94	227	-	-
	Ssu8g1989	231	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1	1	84	-	-
	Ssu8g1989	231	SMART	B3_2	140	228	IPR003340	GO:0003677
	Ssu8g1989	231	MobiDBLite	consensus disorder prediction	64	139	-	-
	Ssu8g1989	231	MobiDBLite	consensus disorder prediction	65	79	-	-
	Ssu8g1989	231	Gene3D	-	120	229	IPR015300	-
	Ssu8g1989	231	Pfam	B3 DNA binding domain	144	221	IPR003340	GO:0003677
	Ssu8g1989	231	CDD	B3_DNA	1	47	IPR003340	GO:0003677
	Ssu8g1989	231	Gene3D	-	1	50	IPR015300	-
	Ssu8g1989	231	ProSiteProfiles	B3 DNA-binding domain profile.	1	49	IPR003340	GO:0003677
	Ssu8g1989	231	SUPERFAMILY	DNA-binding pseudobarrel domain	137	219	IPR015300	-
	Ssu8g1989	231	ProSiteProfiles	B3 DNA-binding domain profile.	167	229	IPR003340	GO:0003677
	Ssu8g1989	231	MobiDBLite	consensus disorder prediction	111	128	-	-
	Ssu8g1989	231	SUPERFAMILY	DNA-binding pseudobarrel domain	2	56	IPR015300	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g1989	3	227	B3 DNA Binding Superfamily	AT3G18990	27.551	2.68e-20	86.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Ssu8g1989		B3	7.5e-13	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1989	-		-	vun:114183160	254.988