Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1969 ATGGAGTCAGGTCCTCCGGCGAACGATTTGTGTTCGGTGTGCCATGGTAACTTTCACATTCCCTGCCAAGCCAATTGTTCTCACTGGTTTTGCGGGAATTGCATTATGCTTGTGTGGCAGCACGGATCAGGTGCTCGCGCTTGCAAGTGTCCCCTCTGTCGCCGCCCCATCACTCTCTTAGTCCCCACCGAAGACTCTCTCAGCCAGCGCCACGACCCTGAAGTTGCTCAGATTCTCTCCAAGATTCATGCTTATAACCGTTTCTTTGGAGGCCAACCAACCACCCTTGTTCAGAGAATGCAAGATCTTCCTTTTCTGTTGCACAGACTGGTGCGGGAGTTCATGGACCCTCAAAGATCCCTTCCTCTTGTCATTCGCGCCCGTGTCATTGTTTCGATGATACTGAGTATTATATACATCTTCAGCCCTATTGACATCATTCCTGAAGGGATATTAGGAATAGTTGGTCTCTTAGATGATCTCCTAATTGCGCTCATCTGCTTCCTACATGTTGCTGCCCTTTATAGATCAGTACTTTACCTACGTCATGGGGGTTCCTGA 561 0.4902 MESGPPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSGARACKCPLCRRPITLLVPTEDSLSQRHDPEVAQILSKIHAYNRFFGGQPTTLVQRMQDLPFLLHRLVREFMDPQRSLPLVIRARVIVSMILSIIYIFSPIDIIPEGILGIVGLLDDLLIALICFLHVAALYRSVLYLRHGGS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1969 186 Pfam Zinc finger, C3HC4 type (RING finger) 11 53 IPR018957 GO:0046872
Ssu8g1969 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Ssu8g1969 186 PANTHER BNAC07G13660D PROTEIN 6 186 - -
Ssu8g1969 186 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Ssu8g1969 186 Pfam Protein of unknown function (DUF1232) 130 165 IPR010652 -
Ssu8g1969 186 SUPERFAMILY RING/U-box 9 62 - -
Ssu8g1969 186 ProSiteProfiles Zinc finger RING-type profile. 11 54 IPR001841 -
Ssu8g1969 186 SMART ring_2 11 53 IPR001841 -
Ssu8g1969 186 PANTHER UNCHARACTERIZED 6 186 IPR038896 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1969 36 186 C3H Transcription Factor Family AT1G72175 72.185 1.04e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1969 K15707 - gmx:100306204 317.39