Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1951 ATGGAATCCCGATTAGTTGATGGAAATGGTGGGGTGGAAATTTCTGGGGATGTGGGTTTGAGTACGTATGAAGTTCAGATACATCAAGAAACATATGAAGTGGATCCAAATGAGGGGTGTAGAGTACTGGAGAGTTCTTCTAGGGGAGGGTTGGGTATCTGTGATGATCATGCTATTCAGGAGCCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGATATTCTATGATGAATATGCTCGACATGTAGGATTTGTCATGCGTGTGATGTCTTGTCGACGCTCAGAAAGGGATGGTAGGATTCTTGCCCGCAGGCTTGGATGTAATAAAGAGGGTTATTGTGTCAGCATCCGAGGGAAATTTACGTCAGTTCGTAAACCTAGGGCCAGCACAAGGGAAGGTTGTAAGGCGATGATTCATATCAAATATGATAAGTCTGGAAAATGGGTGATAACAAAGTTTGTGAAGGAGCATAATCATCCACTAGTAGTCTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACAGCAGAGCTTCGGCATAAGAAACGGTTGTGTGCAACATATCAAGAACAGTTGacttcttttatgaaaattgttgaAGAGCACAGTGAGAAGCTTTCTGCAAAAATTCATCACGTAGTTAATAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGACATAG 726 0.4036 MESRLVDGNGGVEISGDVGLSTYEVQIHQETYEVDPNEGCRVLESSSRGGLGICDDHAIQEPYEGMEFESEDAAKIFYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFTSVRKPRASTREGCKAMIHIKYDKSGKWVITKFVKEHNHPLVVSPREARQTMDEKDKKIQELTAELRHKKRLCATYQEQLTSFMKIVEEHSEKLSAKIHHVVNNLKEFESIEELLHQT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1951 241 Coils Coil 175 202 - -
Ssu8g1951 241 Pfam FAR1 DNA-binding domain 77 165 IPR004330 -
Ssu8g1951 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 29 240 - -
Ssu8g1951 241 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 29 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1951 Ssu-Chr8 50550138 50553386 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu8g1951 FAR1 1.2e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1951 - - gmx:100793266 458.759