Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1944 ATGGATACCTCTGATAATACATGTGAGATAGTGGAATCAAGGGAAGAGATAATTTCTGAGTTCAAAATGGATGAAAAACCTGAGAGTAGTTGTGCCCACAAATCAGGAAAAAAGTATTCGATTGAGGATGATATTAATCGCCTTTTCCAGGCTATTGACATTAAAAATTCATCTAGAGGTCCTAGTTCATCACGTTTACAAAAGAGTTCTCTTAAAAGGCCAATAAAAGTCACTTCATCCCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTAAAGCAGGCACTTAGAGGGTTATGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAGAGACTGTCTAAGCCATGCAGTTCATCTAGAGTATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCAGTGGTAGATGAGGGGAAAGGGAACTTGGTTGAAATTTCTCTTGTGCCGGAGATATCTGCACCTTCTGATACATTGCCTGGTGTAAAAATATCAAGTTCAAGTGCTAATCATTCTAGTCCTTTGGTTGATGCGACAAAACCGAAGGAAATGATAACTGGATTTTCATCCCAAGATCAGATTGTTCCTTTACCATTAGAAGTTGAAGGTGAGAGGCCAATCACGGGGATTGGAAAACCAAAACTTGCAAATTTGTCACCTGTTACCTGTGCAAGTGAAGAAGTGCCAGAGGTCAGAATGGATCCTGCTTCCTCAAGCAAACCTTCTCTTGGTTCTCCAATTCCAGATAAGGGGCAAGAAGCAAATTCACATTCTGCATCTTGTCCACCTAGCTCTAGCACTGGTAGTGGAGTGGATAAATCCACAAGCAGTAATGCATGTTTGTCAAAGCCAATATTCAATAACTTGAACTTCcttaagaaaaaagtaaagcAAGACTTAAGTTCTGCCTCAAACTGCTCTACTTCATGTATAAGAAATGATCCTGGATCTAGTACAAGTAATTTGGACAAGGAGGTTGGCAATTCTGATGTGAAGCACgaagtgaaagaaaatgagaaactGTCTCCTAGTAGTTCAAATCATAGCATTGAAGTTAACTCAATTAATGTTGGTACAGATTCAAGCAAATCTGGCTTCAGCTTGAATTGTAATAAGAGAACTAAGTTTCTGGTGACAAAAGTTGATGAGAAATCTAGATCAAAGGAAAAGGGTGAGTTTTCTCAAAGCTCAAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGTCTAAGTGGTTCCAGTCGCGGTGGCCACAGGCCTCACATGTCAAAACACTTGAGATGGGAAGCTGTCCGTGCTGTTCAGCAGCAACatggtaatttaaatttgaagcaCTTTAAGCTGCTAAGGAGGCTTGGTAGTGGGGACATTGGAACTGTTTATCTTGCAGAACTAATTGGTACAAGCTgcctttttgcactcaaagtgATGGACAATGAATTTTTGGCAAGTCGGAAGAAAATGTTCAGGGCCCAAACTGAAAGAGAGATCCTTCAGATGCTGGATCATCCGTTTCTTCCTACACTGTATTCCCATATTGCGACAGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGTGGAGATCTGCATGTGCTGCGACAGAGGCAACCATACAAGAGTTTCTCGGAGCAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCACATGCTGGGAGTTGTATATCGAGACCTAAAGCCAGAAAATATCCTAGTACGAGAAGATGGACACATTATGCTTACAGATTTTGACTTGTCACTCAGGTGTTCTGTCAATCCAATGTTGGTCAAGTCATCTTCCCCCGACACAGATGCCACAAAGAAGACATCCAGTCCCTGTTCTGAGGCTAGCTGCATTCACCCTTTCTGTCTCCAACCAGATTGGCAAGTTTCCTGCTTTACTCCCATTCTATTATCTGCGGGAGCAAAATCTCGAAAGATGAAAGCTGACATAGCTGCTCAGGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTcggtatatttttgtttgagcTTTTATATGGTAAGACTCCCTTCAAGGGCACATCAAATGAGGATACATTAGCCAATGTTGTGTCACAAAGCCTTAAGTTCCCAGGTGCTCCAATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGTTGATAAAGGATCCTGAAAACCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCATCCCTTCTTTGAAGGCCTCAACTGGGCTCTAATACGGTGTGCAGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAAGTAGTGCTCCATCTATGGCTGCACATAAGGAGAATGCAAATGATTTAGAGGACATAGAAGATTGTGAAGAGTTTGAGCTGTTTTAG 2517 0.4112 MDTSDNTCEIVESREEIISEFKMDEKPESSCAHKSGKKYSIEDDINRLFQAIDIKNSSRGPSSSRLQKSSLKRPIKVTSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRVSEAGTIKRLYTAVVDEGKGNLVEISLVPEISAPSDTLPGVKISSSSANHSSPLVDATKPKEMITGFSSQDQIVPLPLEVEGERPITGIGKPKLANLSPVTCASEEVPEVRMDPASSSKPSLGSPIPDKGQEANSHSASCPPSSSTGSGVDKSTSSNACLSKPIFNNLNFLKKKVKQDLSSASNCSTSCIRNDPGSSTSNLDKEVGNSDVKHEVKENEKLSPSSSNHSIEVNSINVGTDSSKSGFSLNCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHLRWEAVRAVQQQHGNLNLKHFKLLRRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKMFRAQTEREILQMLDHPFLPTLYSHIATDKLSCLVMEYCPGGDLHVLRQRQPYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTSSPCSEASCIHPFCLQPDWQVSCFTPILLSAGAKSRKMKADIAAQVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGIFLFELLYGKTPFKGTSNEDTLANVVSQSLKFPGAPIVSFHARDLIRGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGSSAPSMAAHKENANDLEDIEDCEEFELF 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1944 838 PANTHER FLIPPASE KINASE 1-RELATED 1 837 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 343 357 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 306 326 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 395 423 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 388 429 - -
Ssu8g1944 838 SUPERFAMILY Protein kinase-like (PK-like) 428 806 IPR011009 -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 306 357 - -
Ssu8g1944 838 CDD STKc_phototropin_like 451 810 - -
Ssu8g1944 838 Gene3D Transferase(Phosphotransferase) domain 1 533 602 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 228 275 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 239 275 - -
Ssu8g1944 838 Pfam Protein kinase domain 684 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1944 838 Pfam Protein kinase domain 454 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1944 838 MobiDBLite consensus disorder prediction 327 342 - -
Ssu8g1944 838 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 837 - -
Ssu8g1944 838 MobiDBLite consensus disorder prediction 56 75 - -
Ssu8g1944 838 ProSiteProfiles Protein kinase domain profile. 453 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1944 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Ssu8g1944 838 SMART serkin_6 453 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g1944 838 Gene3D Phosphorylase Kinase; domain 1 451 532 - -
Ssu8g1944 838 Gene3D Transferase(Phosphotransferase) domain 1 681 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1944 Ssu-Chr8 50459800 50463151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1944 293 838 AGC Kinase Gene Family AT3G52890 59.115 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g1944 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1944 - - gmx:100784955 1430.62