Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1938 ATGTCGATGGTGCTGAGGAAGGTGTGGGAAATGGTGTCGTGGAGATCCGATTCACCAACGTCAGCATCATCACCAGAAGCGGCACGTTCAGACATGGGTGAGTTGGAGCTGCTACCCACTGACATCTCGATGCAAATTCTGAGGCTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGGTCCCTTGTGTCTGATAATCGACTTTGGGTTCACTTTCTTCAGACCCACCAGGCTGATCCCTCTGGGGATTATGTCTTCTTTGCTGAGACCAACTTGAGCTCTGGCTACCCTCTTCCAGCCTTCATTGGCCATTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATGTCCATCTGGGCAATCGGCAACATTTTTGGAATTTGGTAACATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTCGCAACTATTTATAACAGGATGCAGGTGAAAGCGAATAAACAACCAGTTATTGTTTCTGTACCAGTATGCCATTATAATGATAGTGAATCAGCCAAAGCATCGAGGCGACAACTTAAAGAAGCAATTTATGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTATGCTGCGAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCAGTGAAACTTACAGGATTTCTGAGGGAGAAGATGCAACTGAATAACTTAAATTTTCAGTCTTTGTACACTGTTCGCACATTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCCGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTACCCTTTCAAAAGAGAGGTTTCAGACAGCAGAGATCTTATTCCAGCCACATCTTGCCGGAgtGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTCTGTGTGGAACATTGCCATTCTGCAGATTTAGCAGGTGACAGTGATTGGTACAAAACTATAGTCTTATCAGGGGGAACTGCATGCTTACCTGGTTTGGCTgAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACATGTCCAATGGAATTAGAGTCATACCTCCTCCATACGGTGCTGATATGCCTTGGTTTGGAGCAAAGATTATTGGCAATTTGAGCACCTTTCCTAGTCATTGGTGTGTGACCAAAAAGCAGTTCCGTCAGAAGCCTAGGCTCAACCTCATATGGTGA 1404 0.4444 MSMVLRKVWEMVSWRSDSPTSASSPEAARSDMGELELLPTDISMQILRLLGPKEAAKLSVVCKALRSLVSDNRLWVHFLQTHQADPSGDYVFFAETNLSSGYPLPAFIGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYACPSGQSATFLEFGNIESPMYTRLRHFFATIYNRMQVKANKQPVIVSVPVCHYNDSESAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGAVKLTGFLREKMQLNNLNFQSLYTVRTLKEKLCYVALDYEAELLKDTQASFEAAGEGWFTLSKERFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLAGDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYMSNGIRVIPPPYGADMPWFGAKIIGNLSTFPSHWCVTKKQFRQKPRLNLIW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1938 467 Gene3D - 172 459 - -
Ssu8g1938 467 Gene3D - 23 126 - -
Ssu8g1938 467 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Ssu8g1938 467 Pfam F-box-like 37 77 IPR001810 GO:0005515
Ssu8g1938 467 Gene3D - 234 432 - -
Ssu8g1938 467 PANTHER MACRONUCLEAR ACTIN 82 464 - -
Ssu8g1938 467 Pfam Actin 176 457 IPR004000 -
Ssu8g1938 467 Gene3D Actin; Chain A, domain 4 277 360 - -
Ssu8g1938 467 SMART actin_3 127 466 IPR004000 -
Ssu8g1938 467 SMART fbox_2 38 78 IPR001810 GO:0005515
Ssu8g1938 467 PANTHER ACTIN 82 464 IPR004000 -
Ssu8g1938 467 SUPERFAMILY F-box domain 26 89 IPR036047 GO:0005515
Ssu8g1938 467 SUPERFAMILY Actin-like ATPase domain 243 457 IPR043129 -
Ssu8g1938 467 SUPERFAMILY Actin-like ATPase domain 129 249 IPR043129 -
Ssu8g1938 467 CDD NBD_sugar-kinase_HSP70_actin 130 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1938 Ssu-Chr8 50353222 50362435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1938 176 463 Cytoskeleton Gene Families AT3G12110 33.670 7.30e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1938 K16616 - gmx:100791973 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1938 8 50353222 50362435 Ssu8g1938 8 50353222 50362435 ECH