Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1933 ATGAATATGACAAATAAGCCAAACCCAGATAATGGGTTTCAGTCTCAGCTGctgcagcagcagcagcaacaacaacaacatagtTCTATGCCAAATGGGAGGGAGGGATCATCTACACGCACACCCACTAAACCTTATCCTGCACCAACGGCTCCCTACCAGGACATTGTTCGTGAAGCAAACCTCTTCTGGGGAACGCTTCAAGCTTTTCACAGATCACTTGGCACCAAATATAAGGTTGCTACTGTTGGAGGAACGCCACTTGATCTACATCGCCTTTTTGTGGAAGTAACATCTCGTGGTGGGATTGAAAAGGTGATTGTTGATCGTAAGTGGAAGGAAGTGATTCTGACCTTCAATTTCAAAGATACCATAACGAGTGCATCATTTATGGTGCGCAAATCCTATTTATCGATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAAGCAAGGCATTCCTCCCCCAACACCTGATCTTATGATTAGAGGCCCCCCGGGCCATCCCTATAGCTCCACAACCATTCCGGAAGTTCCTGCTGTGAATGATTCACCTGTTCAGGGTAGTCTAGTACAGGCATATGATGCTATGCTTTCTGGATCaattgatgtgaaatttgatggtGGATATGTAGTTACAATGACTCTAGGTTCTGAGCAGCTGAAAGGTGTCCTGTTTCATGTTCCTAACACCGTGTCCCAGAGTTCTCATGCCGAAGGCATGTCTACTTCACAGAATCAAGGTGAAGGCACGTCTAGTTCACAGAGTCGAAAGAGAGCAAAATATACACCACGTGATCCATCTCGGCCAAAGTCAAATAGGAGTggttacaattttttctttgctGAGAATTATGCCAGGCTGAAGCCTGCTTATCATGGGCAAGAGAGAGCAATTAGCAAGCGGATTGGATTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAGAGATAAGGAAAGATACAGGACTGAACTGATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 1044 0.4148 MNMTNKPNPDNGFQSQLLQQQQQQQQHSSMPNGREGSSTRTPTKPYPAPTAPYQDIVREANLFWGTLQAFHRSLGTKYKVATVGGTPLDLHRLFVEVTSRGGIEKVIVDRKWKEVILTFNFKDTITSASFMVRKSYLSMLYHFEQVYYFGKQGIPPPTPDLMIRGPPGHPYSSTTIPEVPAVNDSPVQGSLVQAYDAMLSGSIDVKFDGGYVVTMTLGSEQLKGVLFHVPNTVSQSSHAEGMSTSQNQGEGTSSSQSRKRAKYTPRDPSRPKSNRSGYNFFFAENYARLKPAYHGQERAISKRIGFLWNNLSEAERQVYQEKGVRDKERYRTELMEYKSNNSTPNAQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1933 347 MobiDBLite consensus disorder prediction 236 276 - -
Ssu8g1933 347 MobiDBLite consensus disorder prediction 236 259 - -
Ssu8g1933 347 Gene3D - 51 154 IPR036431 GO:0003677
Ssu8g1933 347 CDD ARID_HMGB9-like 62 144 IPR045303 GO:0003677
Ssu8g1933 347 SUPERFAMILY ARID-like 55 157 IPR036431 GO:0003677
Ssu8g1933 347 Pfam ARID/BRIGHT DNA binding domain 61 144 IPR001606 GO:0003677
Ssu8g1933 347 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 346 - -
Ssu8g1933 347 SMART bright_3 58 149 IPR001606 GO:0003677
Ssu8g1933 347 MobiDBLite consensus disorder prediction 1 51 - -
Ssu8g1933 347 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 22 346 - -
Ssu8g1933 347 CDD HMGB-UBF_HMG-box 271 334 - -
Ssu8g1933 347 Gene3D High mobility group box domain 253 346 IPR036910 -
Ssu8g1933 347 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 271 338 IPR009071 -
Ssu8g1933 347 SUPERFAMILY HMG-box 268 341 IPR036910 -
Ssu8g1933 347 Pfam HMG (high mobility group) box 271 338 IPR009071 -
Ssu8g1933 347 ProSiteProfiles ARID domain profile. 57 148 IPR001606 GO:0003677
Ssu8g1933 347 SMART hmgende2 270 339 IPR009071 -
Ssu8g1933 347 MobiDBLite consensus disorder prediction 1 44 - -
Ssu8g1933 347 SMART ARID_2 54 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1933 Ssu-Chr8 50291446 50295942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1933 25 343 ARID Transcription Factor Family AT3G13350 48.589 3.37e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu8g1933 ARID 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1933 - - gmx:100793029 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1933 8 50291446 50295942 Ssu8g1933 8 50291446 50295942 ECH