Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1927 ATGTCGGAGAGCGATCAGCGCCGTCTTCTGGGGTCGTCGGAGGATGACGTGGAAGGCCGAGGGTCGGAGTTGGCGGTCGTCAATGGCGGTGGCGGCAACAAAGGGTTCAGGGATTTGTTAAGGTTGTCGGGTCACCGACACAGTTTCAAGCGTATTGACAAAGAAGATGATAGGGACGGGGATGGAAGGGATCAGCATCGGCACCATCACGGTGTGGATCTCGAATCTTCTGTCGATGTGCTTGGCGACAGTGCACCTCCTGAATGGGCGTTGCTTCTCATTGGTTGCCTCATTGGCCTCACCACTGGCCTCTTTGTTGCCGCTTTCAATAAAGGGGTGCATATAATACATGAATGGGTATGGGCTGGTACACCAAATGAGGGTGCTGCCTATCTTCGTATTCAGAGATTGGCTGATACATGGCATCGAATCCTTTTGATACCTGTCACTGGAGGAGTCATTGTCGGCGTGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAGTCGACTTCCTCTCAGACAcaaggtttttattttatttcaggaATCTTTCCAACAATAAAGGCTATCCAGGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTTGATATTGGGAAGTCATGTGCCAACGGATTCTCACTAATGATGGAACACAACAGAGAAAGGAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCACCAGTTGCTGGATGTTTCTTTGCTATTGAAACTGTGCTGAGGCCTCTTCGTGCAGAGAACTCTCCCCCATTTACAACTGCCATGATTATATTGGCTTCTGTTCTCTCGTCAACTGTATCAAATGTTTTACAGGGGATCCAATCAGCTTTTACAATACCAGAGTATGATTTGAAATCTGCTGCTGAGCTACCTTTATACCTAATATTGGGAATGCTATGTGGTGTTATAAGTGTGGCCATGACTCGTTTGGTTGCTTGGTTCACCAAATTGTTTAAGATTATTCAGGATAAGTTTGGCATTCCTACTGTAGTCTGTCCTGCTTTAGGTGGCTTAGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTGGACGAAATTCTACGTACTGGAAAGAGTGCTTCAGCTCCTGGAATCTGGCTTCTGACTCAATTGGTAGCTGCTAAGGTTATTGCGACAGCTCTTTGCAAGGGATCTGGACTAGTAGGTGGTCTTTATGCTCCGAGTTTAATGATTGGTGCTGCGGCTGGTGCTGTATTTGGAGGCTTTTCTGCTGAAGTTATCAATTCAACTATTCCTGGAAATGCTGCTGTTGCTCAACCCCCAGCATATGCTCTGGTTGGAATGGCTGCTACATTAGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTTTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCACTCATGGGAGCTGTTGGATTGGCAATATGGGTTCCCTCGGTGGCAAACCAGGTGAAGGAGAGTGATAAACCTGATACAAGTAGCTCAGCAAGAGAATATTCTTCAGTTTCAAATGCTGAAGATGATAATGAGGATAACTGGAGACAAGCCAATGATGGGAATGATTTAGAACTCCGTGTTGTTGGAGATGACATTGATCTTGAAGCAATTGATACGGAACTGCTTCTGGACAATCTTCAGGTTTCTCAGGCCATGTCAATACAGTATCTGAAGGTTTCGTCATCTGCAACCCTGAAAGATGCAATAAAATGCCTGCATGACAGCCAGCAGAATTGTGTGCTGGTGGTTGATAAAGAAGATTTTCTAGAAGGAATATTGACATATGGTGACGTTAAAAGGTGTCTGTCCCAGCAGTCTAATGATACTTCGAAGAGTGATTCAGGGATTCTGGATGCAAACACATGCCTTGTTTCCTCTGCCTGTACTCGAGGGATGAGCTATCGTGGACGAGAGCGAGGAATTTTAACCTGCTATCCAAATACTAGTTTGGCTATGGCCAAAGAGTTGATGGAGGCCAAGGGCATTAAGCAATTACCGGTGGTTAAACGTGGTGGAGATCACAGTAGAGAGAGCAAGCGGAGAATTGTTGGTCTTCTTCATTATGATGCACTATGGCAATGTCTCAGGAAAGAGATTAATCACCGGCAGTCGGCCTATCAAAATAGGACAGATAGCAATTTGGCTGTGATAACAACAAATGGGAATTAA 2256 0.4473 MSESDQRRLLGSSEDDVEGRGSELAVVNGGGGNKGFRDLLRLSGHRHSFKRIDKEDDRDGDGRDQHRHHHGVDLESSVDVLGDSAPPEWALLLIGCLIGLTTGLFVAAFNKGVHIIHEWVWAGTPNEGAAYLRIQRLADTWHRILLIPVTGGVIVGVMCGLLEILDQIKQSTSSQTQGFYFISGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMEHNRERKIALVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAENSPPFTTAMIILASVLSSTVSNVLQGIQSAFTIPEYDLKSAAELPLYLILGMLCGVISVAMTRLVAWFTKLFKIIQDKFGIPTVVCPALGGLGAGIIALKYPGILYWGFTNVDEILRTGKSASAPGIWLLTQLVAAKVIATALCKGSGLVGGLYAPSLMIGAAAGAVFGGFSAEVINSTIPGNAAVAQPPAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQVKESDKPDTSSSAREYSSVSNAEDDNEDNWRQANDGNDLELRVVGDDIDLEAIDTELLLDNLQVSQAMSIQYLKVSSSATLKDAIKCLHDSQQNCVLVVDKEDFLEGILTYGDVKRCLSQQSNDTSKSDSGILDANTCLVSSACTRGMSYRGRERGILTCYPNTSLAMAKELMEAKGIKQLPVVKRGGDHSRESKRRIVGLLHYDALWQCLRKEINHRQSAYQNRTDSNLAVITTNGN 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1927 751 Pfam Voltage gated chloride channel 165 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 MobiDBLite consensus disorder prediction 515 532 - -
Ssu8g1927 751 ProSiteProfiles CBS domain profile. 581 638 IPR000644 -
Ssu8g1927 751 SUPERFAMILY CBS-domain pair 575 729 IPR046342 -
Ssu8g1927 751 MobiDBLite consensus disorder prediction 515 547 - -
Ssu8g1927 751 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 PRINTS Chloride channel signature 477 496 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 PRINTS Chloride channel signature 459 475 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 PRINTS Chloride channel signature 418 438 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu8g1927 751 ProSiteProfiles CBS domain profile. 666 733 IPR000644 -
Ssu8g1927 751 SUPERFAMILY Clc chloride channel 87 510 IPR014743 -
Ssu8g1927 751 MobiDBLite consensus disorder prediction 533 547 - -
Ssu8g1927 751 Gene3D Clc chloride channel 77 520 - -
Ssu8g1927 751 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 42 746 - -
Ssu8g1927 751 CDD Voltage_gated_ClC 102 504 - -
Ssu8g1927 751 CDD CBS_pair_voltage-gated_CLC_euk_bac 581 721 - -
Ssu8g1927 751 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g1927 751 Pfam CBS domain 669 716 IPR000644 -
Ssu8g1927 751 Pfam CBS domain 577 630 IPR000644 -
Ssu8g1927 751 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 42 746 - -
Ssu8g1927 751 Gene3D - 558 724 IPR046342 -
Ssu8g1927 751 SMART cbs_1 584 632 IPR000644 -
Ssu8g1927 751 SMART cbs_1 669 725 IPR000644 -
Ssu8g1927 751 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1927 Ssu-Chr8 50148360 50165871 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1927 - - gmx:100796023 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1927 8 50148360 50165871 Ssu8g1927 8 50148360 50165871 ECH